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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaataattactttgtatgttcactaaactcttacttactgctctacttgatgaatcgtttcttttttacttttatgaatagGTCTATTCAAACCTTGATGGCAACAGATCTCACGTCGTGAATACAGCATGGGCTATGCTCGCACTCATTGGTGCTGGGCAA

Basic information

species Arabidopsis thaliana
transcript AT2G07050.1
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G07050.1 (Arabidopsis thaliana), 3'ss of exon 15
lower sequence: Vv11s0065g00640.t01 (Vitis vinifera), 3'ss of exon 16
-----------gttaataattactttgtatgttca-----ctaaactcttacttactgctctacttgatgaatcgtttcttttttacttttatga-atagGTCTATTCAAACCTTGATGGCAACAGATCTCACGTCGTGAATACAGCATGGGCTATGCTCGCACTCATTGGTGCTGGGCAA
            || |||||   |  | |  || |     ||||   | |   |  ||   | |||    |||  || ||||    ||||| |   | |||| |||||||| |||||||||||||||||||| || || ||||| |||||||||||||| || ||||||| ||||||||| 
acacttaaaacctttataatgggtgagaagattgaaatctctaatgccatttcttgtgtagttcttttacaatttttcctttaaagcttttgttttacagGTGTATTCAAATCTTGATGGCAACAGATCTCATGTAGTAAATACCGCATGGGCTATGCTGGCTCTCATTGATGCTGGGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116474686|gb|EG517278.1|EG517278
EST:     CTTCGGGCGGCTGGGGAGAAAGCTATCTTTCATGTCAAGACAAG                         GTCTATTCAAACCTTGATGGCAACAGATCTCACGTCGTGAATACAGCATGG
genomic: CTTCGGGCGGCTGGGGAGAAAGCTATCTTTCATGTCAAGACAAGgttaataatt ... ttatgaatagGTCTATTCAAACCTTGATGGCAACAGATCTCACGTCGTGAATACAGCATGG
EST: gi|116474685|gb|EG517277.1|EG517277
EST:     CTTCGGGCGGCTGGGGAGAAAGCTATCTTTCATGTCAAGACAAG                         GTCTATTCAAACCTTGATGGCAACAGATCTCACGTCGTGAATACAGCATGG
genomic: CTTCGGGCGGCTGGGGAGAAAGCTATCTTTCATGTCAAGACAAGgttaataatt ... ttatgaatagGTCTATTCAAACCTTGATGGCAACAGATCTCACGTCGTGAATACAGCATGG
EST: gi|125157733|gb|EL186666.1|EL186666
EST:     AACAACCTTCGGGCGGCTGGGGAGAAAGCTATCTTTCATGTCAAGACAAG                         GTCTATTCAAACCTTGATGGCAACAGATCTCACG
genomic: AACAACCTTCGGGCGGCTGGGGAGAAAGCTATCTTTCATGTCAAGACAAGgttaataatt ... ttatgaatagGTCTATTCAAACCTTGATGGCAACAGATCTCACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actcttacttactgctctacttgatgaatcgtttcttttttacttttatgaatagGTCTATTCAAACCTTGATGGCAACAGATCTCACGTCGTGAATACAGCATGGGCTATGCTCGCACTCATTGGTGCTGGGCAA
                            tcgtttcttttttact  CT-rich tract
                               tttcttttttactttt  TA-rich tract