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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggctcatttctaggtttttggaaagaaacgttttatgttttttattttgttgtaattgagattcagtactcctcttatattacagGTAACTACAATGTATCATCTGGACCGTCCTATGTACTTGTTGGGTTATCTCGCTAATCAAAGCAGGGTTTATTTGATTGACAAAGAGTTCAA

Basic information

species Arabidopsis thaliana
transcript AT1G79990.5
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G79990.1 (Arabidopsis thaliana), 3'ss of exon 19
lower sequence: LOC_Os06g05180.1 (Oryza sativa), 3'ss of exon 15
---------gtaaggctcatttctaggtttttggaaaga-aacgttttatgttttttattttgttgta-attgagattcagtactcctcttatattacagGTAACTACAATGTATCATCTGGACCGTCCTATGTACTTGTTGGGTTATCTCGCTAATCAAAGCAGGGTTTATTTGATTGACAAAGAGTTCAA
         ||  |   |||       |||||     |  || || || | | || || | | ||||  | |   | |   | |   | |    |||||||| || || ||||||||  |||| || ||||||||||||||||| ||||| || ||||||||| | |||||| | |||||||| || |||||
gtatatattgtgtgctccatgcaagaatttttattttgttaatgtattttctattgtagtattttgtgcactacaaatttatcccgttgtacatttacagGTCACCACGATGTATCACTTGGATCGCCCTATGTACTTGTTGGGATATCTAGCGAATCAAAGCCGAGTTTATCTTATTGACAAGGAATTCAA

upper sequence: AT1G79990.1 (Arabidopsis thaliana), 3'ss of exon 19
lower sequence: GRMZM2G000645_T01 (Zea mays), 3'ss of exon 15
---------------------gtaaggctcatttctaggtttttggaaagaaacgttttatgttttttattttgttgtaattgagattcagtactcctcttatattacagGTAACTACAATGTATCATCTGGACCGTCCTATGTACTTGTTGGGTTATCTCGCTAATCAAAGCAGGGTTTATTTGATTGACAAAGAGTTCAA
                       |   ||  | | ||  || |    | |   |  || ||||  |   ||   |||         ||   ||  | |  ||  |||||||| ||||||||||||||| |||| || ||||||||||||||||| ||| | || || |||||  | |||||| | |||||||| ||||| ||
gtaaatatagtctgctcgaaaacatttcttctgtttaaattctctatatggg-cacttcatgtcatgacttcaattgcttacatagtt--ataagctttatac-ttacagGTCACTACAATGTATCATTTGGATCGCCCTATGTACTTGTTGGGATATATTGCGAACCAAAGTCGAGTTTATCTTATTGACAAGGAGTTGAA

upper sequence: AT1G79990.1 (Arabidopsis thaliana), 3'ss of exon 19
lower sequence: GRMZM2G095348_T03 (Zea mays), 3'ss of exon 15
--------------------------gtaaggctcatttctaggtttttggaaagaaacgttttatgttttttattttgttgtaattgagattcagtactcctcttatattacagGTAACTACAATGTATCATCTGGACCGTCCTATGTACTTGTTGGGTTATCTCGCTAATCAAAGCAGGGTTTATTTGATTGACAAAGAGTTCAA
                          ||     ||  ||  || | | |  |  |  || || |  ||      ||   ||||        ||   ||  | |  ||  |||||||| ||||||||||||||| |||| || ||||||||| | ||||| ||||| || || |||||  | |||||| | |||||||| ||||| ||
gtaaaaatagtctactccttgaaaacgttttcttctgtttaagttctctatatggccactttgtgagtcacgacttcaattgtttacacagtt--ataagctttgtac-ttacagGTCACTACAATGTATCATTTGGATCGCCCTATGTACCTATTGGGATATCTTGCGAACCAAAGTCGAGTTTATCTTATTGACAAGGAGTTTAA

upper sequence: AT1G79990.1 (Arabidopsis thaliana), 3'ss of exon 19
lower sequence: GLYMA15G01680.1 (Glycine max), 3'ss of exon 15
------gtaaggctcatttctaggtttttgga--aagaaacgttttatgttttttattttgttgtaat-tgagattcagtactcctctta------------tat---tacagGTAACTACAATGTATCATCTGGACCGTCCTATGTACTTGTTGGGTTATCTCGCTAATCAAAGCAGGGTTTATTTGATTGACAAAGAGTTCAA
             ||  |||||| ||| | |   || ||| |  || ||  || | |||  ||| | |  |||  |||  |  | ||||             |||   |  |||||||||| |||| |||| ||||||| ||||||||||||||||| ||||| || || |||||  | ||||||||||||||||||||||| ||
gtattaactcttttcccttctagatttctagtttaaaaaaagaattgtgcattctttttaattgaactacgaggatcatgagacatcttgatacataatgattatgaatttagGTAACTACGATGTTTCATTTGGACCGCCCTATGTACTTGTTGGGATATCTTGCAAACCAAAGTCGTGTTTATTTGATTGACAAAGAGTTTAA

upper sequence: AT1G79990.1 (Arabidopsis thaliana), 3'ss of exon 19
lower sequence: GLYMA13G43680.1 (Glycine max), 3'ss of exon 15
------gtaaggctcatttctaggtttttgg---aaagaaacgttttatgttttttattttgttgtaat-tgagattcagtactcctctta------------tat---tacagGTAACTACAATGTATCATCTGGACCGTCCTATGTACTTGTTGGGTTATCTCGCTAATCAAAGCAGGGTTTATTTGATTGACAAAGAGTTCAA
             ||  |||||| ||| | |   ||| ||   || |   || ||| |||  ||| | |   ||  |||  |  | ||||             |||   |  |||||||||| |||| |||| ||||||| || |||||||||||||| ||||| || || |||||  | ||||||||||||||||||||||| ||
gtattaactcttttcccttctagatttctagtttaaaaaagaattgtgcattcttt-tttaattgaactacaaggatcatgagacatcttgatgcataatgattatgaatttagGTAACTACGATGTTTCATTTGGACCGCCCCATGTACTTGTTGGGATATCTTGCAAACCAAAGTCGTGTTTATTTGATTGACAAAGAGTTTAA

upper sequence: AT1G79990.1 (Arabidopsis thaliana), 3'ss of exon 19
lower sequence: GLYMA07G03890.2 (Glycine max), 3'ss of exon 4
------------------------------------------------------------gtaaggctcatttctaggtttttggaaagaaacgttttatgttt-tttattttgttgtaattgagattcagtactcctc------ttatatta------cagGTAACTACAATGTATCATCTGGACCGTCCTATGTACTTGTTGGGTTATCTCGCTAATCAAAGCAGGGTTTATTTGATTGACAAAGAGTTCAA
                                                            ||||   || |||||  || ||    ||      || ||||| | ||||||    |  ||     || || | |   |       ||| ||||       |||| |||||||||| |||| ||||||||||||||||||||||||| ||||| || |  ||||| | ||| |||||||| |||||||| |||||
gtatttatacttttcccttttagattcaaaagagctctgtatttatttattgaactctcggtaatcatcttttctttgtcttcatgaatt--tcttatatgtatatttattgaactacaaggatcatacaattcctgttgttgcattacattatggatttagGTTACTACAATGTTTCATTTGGACCGTCCTATGTACTTGTTGGGATATCTTGCCAGCCAAAGTAAGGTCTATTTGATAGACAAAGAATTCAA

upper sequence: AT1G79990.1 (Arabidopsis thaliana), 3'ss of exon 19
lower sequence: GLYMA08G22140.1 (Glycine max), 3'ss of exon 15
------------------------------------------------------------gtaaggctcatttctaggtttttggaaagaaacgttttatgttt-tttattttgttgtaattgagattcagtactcctc------ttatatta------cagGTAACTACAATGTATCATCTGGACCGTCCTATGTACTTGTTGGGTTATCTCGCTAATCAAAGCAGGGTTTATTTGATTGACAAAGAGTTCAA
                                                            || |   || |||||  || ||  ||   |    || ||||| | ||||||    |  ||     || || | |   |       ||| ||||       |||| |||||||||| |||| ||||||||||||||||||||||||| ||||| || |  ||||| | ||| |||||||| |||||||| |||||
gtatttactcttttcccttttagattctaaagagctccatatttatttattgaactctttgttatcatcttttctttgtgtt--gatgaatttcttatatgtatatttattgaactacaaggatcatacaattcctgttgatgcattacattatgaatttagGTTACTACAATGTTTCATTTGGACCGTCCTATGTACTTGTTGGGATATCTTGCCAGCCAAAGTAAGGTCTATTTGATGGACAAAGAATTCAA

upper sequence: AT1G79990.1 (Arabidopsis thaliana), 3'ss of exon 19
lower sequence: Vv09s0002g04810.t01 (Vitis vinifera), 3'ss of exon 15
-------gtaaggctcatttct-------aggtttttggaaagaaacgttttatgttttttattttgttgtaattgagattcagtactcc----tcttatattacagGTAACTACAATGTATCATCTGGACCGTCCTATGTACTTGTTGGGTTATCTCGCTAATCAAAGCAGGGTTTATTTGATTGACAAAGAGTTCAA
       |||  |  ||    |       | || |||  | |    |   | || |   ||   | | | |  | ||| ||   |  |       | ||| || |||||||| ||||||| |||| ||||||| |||||||| |||||||| ||||| |||||||||||| |||| ||| | || ||||||||||||||
gtattgtgtattgtccacccttgtcttgaaagtatttccatatgtgcagatgatatccatttcatggatttcttggagcttttttgttaaataaccatatgttccagGTAACCACAATGTTTCATTTGGACCGGCCTATGTATTTGTTGGGATATCTAGCTAATCAAAGCCGGGTGTATCTCATAGACAAAGAGTTCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttatgttttttattttgttgtaattgagattcagtactcctcttatattacagGTAACTACAATGTATCATCTGGACCGTCCTATGTACTTGTTGGGTTATCTCGCTAATCAAAGCAGGGTTTATTTGATTGACAAAGAGTTCAA
                                    tactcctctt  CT-rich tract
     tgttttttattttgtt  TA-rich tract