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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttgcattttcttgttgaggatagtgttctttagctttgtctatgatcagttttgtgaatattggtggtattgatatcgcagGTTGAGATTATGGATATTCCTGCAGATACAAGAGACAAAGATGAAATACTCGAAAGCGAGTTTTTCGACACTAGACAAGCATTTCTGAGTCTTTGTCAAG

Basic information

species Arabidopsis thaliana
transcript AT1G79000.1
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G79000.1 (Arabidopsis thaliana), 3'ss of exon 15
lower sequence: GLYMA08G24290.1 (Glycine max), 3'ss of exon 16
--------gtgagttgcattttcttgttgaggat---agtgttctttagctttgtctatgatcagttttgtgaatattggtggtattga----tatcgcagGTTGAGATTATGGATATTCCTGCAGATACAAGAGACAAAGATGAAATACTCGAAAGCGAGTTTTTCGACACTAGACAAGCATTTCTGAGTCTTTGTCAAG
        |  |  |  | | |     |    |    |   | |  |||||     ||| |     |||| |||| ||  |    |||     ||  ||||||||| ||||  ||| ||||| | |||||||  ||||||||||| || || || ||||| || || ||||||||||| |||||||||||||| || || |
ttctgaaagcaaaataaactattcaaatacatacacaatcatacggtagctccaagtataagtgaatttg-gaatttttttaaacttgcatcttaatgcagGTTGAAATTACTGATGTTCCTTCTGATACAAAGGACAAAGATGATATTCTTGAGAGCGAATTCTTTGACACTAGACAGGCATTTCTGAGTCTCTGCCAGG

upper sequence: AT1G79000.1 (Arabidopsis thaliana), 3'ss of exon 15
lower sequence: GLYMA07G00230.1 (Glycine max), 3'ss of exon 14
------------gtgagttgcattttcttgttgaggatagt-gttctttagctttgtctatga-tcagttttgtgaatattggtggtattgatatcgcagGTTGAGATTATGGATATTCCTGCAGATACAAGAGACAAAGATGAAATACTCGAAAGCGAGTTTTTCGACACTAGACAAGCATTTCTGAGTCTTTGTCAAG
            |  |  |    | |     |    | | |    |  |||||     ||| | | | |||||  | | ||   |    | ||   ||||||||| ||||  ||| ||||| | |||||||  ||||||||||| || || || ||||| || || ||||||||||| |||||||||||||| || || |
acttttcttaaagcaaaataagctattcaaatacacacaatcacgcggtagctccaagtataagtgaattttggaatttttaacgtgcatcatgatgcagGTTGAAATTACTGATGTTCCTTCTGATACAAAGGACAAAGATGATATTCTTGAGAGCGAATTCTTTGACACTAGACAGGCATTTCTGAGTCTCTGCCAGG

upper sequence: AT1G79000.1 (Arabidopsis thaliana), 3'ss of exon 15
lower sequence: Vv09s0054g01780.t01 (Vitis vinifera), 3'ss of exon 13
-----------------------------------gtgagttgcatttt------cttgttgaggatagtgttctttagctttgtctatgatcagttttgtgaatattggtggtattgatatcgcagGTTGAGATTATGGATATTCCTGCAGATACAAGAGACAAAGATGAAATACTCGAAAGCGAGTTTTTCGACACTAGACAAGCATTTCTGAGTCTTTGTCAAG
                                    |  |||   ||||      ||  |||| | |    |   |     ||  | ||  || | |  |  |||   | | |  |  |    ||||||||| || |  ||  | ||| ||||||| |  || || ||||| || || || || || || || ||||| ||||| ||||||||||||||||||||||
gtaagttctataatccattagttaatatagttaatttttgttatgttttggtcaactatttgaaggttacatcaatgcttatttgcaatattctgatcagaaaattgagcttgc-taaaccctgcagGTTGAAATCAACGACGTACCTTCAGATACTAAGGATAAGGATGAGATTCTGGAGAGTGAATTCTTTGACACCAGACAGGCATTTCTGAGTCTTTGTCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctttagctttgtctatgatcagttttgtgaatattggtggtattgatatcgcagGTTGAGATTATGGATATTCCTGCAGATACAAGAGACAAAGATGAAATACTCGAAAGCGAGTTTTTCGACACTAGACAAGCATTTCTGAGTCTTTGTCAAG
                                         tattgat  putative branch site (score: 3)
                                         tattgatat  TA-rich tract