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gtaatgagttggttagaagttagaactaagtgttgtaagaaccgaaaagcgaaaaacttattgaactctacctttgcttgctttgtttgttgtttgataaacagATCCTTCCTGTGAACATAAAGGGTTTAGCTGGAAGTATTGCAACTCTAGCCAATTGGTTCTTTTCTTGGTTGATCACCATGACAGCAAATTTGCTGTTAG
species | Arabidopsis thaliana |
transcript | AT1G75220.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: TCTTTTTCTCATTGGGAATGGGACCAATACCGTGGCTCATTATGTCTGAG ATCCTTCCTGTGAACATAAAGGGTTTAGCTGGAAGTATTGCAACTEST: gi|125203273|gb|EL218227.1|EL218227
genomic: TCTTTTTCTCATTGGGAATGGGACCAATACCGTGGCTCATTATGTCTGAGgtaatgagtt ... tgataaacagATCCTTCCTGTGAACATAAAGGGTTTAGCTGGAAGTATTGCAACT
EST: TCTTTTTCTCATTGGGAATGGGACCAATACCGTGGCTCATTATGTCTGAG ATCCTTCCTGTGAACATAAAGGGTTTAGCTGGAAGTATTGCAACTCTAGCCEST: gi|125315603|gb|EL329688.1|EL329688
genomic: TCTTTTTCTCATTGGGAATGGGACCAATACCGTGGCTCATTATGTCTGAGgtaatgagtt ... tgataaacagATCCTTCCTGTGAACATAAAGGGTTTAGCTGGAAGTATTGCAACTCTAGCC
EST: TTATGTCTGAG ATCCTTCCTGTGAACATAAAGGGTTTAGCTGGAAGTATTGCAACTCTAGCCEST: gi|86087762|gb|DR383521.1|DR383521
genomic: TTATGTCTGAGgtaatgagtt ... tgataaacagATCCTTCCTGTGAACATAAAGGGTTTAGCTGGAAGTATTGCAACTCTAGCC
EST: CTCATTGGGAATGGGACCAATACCGTGGCTCATTATGTCTGAG ATCCTTCCTGTGAACATAAAGGGTTTAGCTGGAAGTATTGCAACTCTAGCCEST: gi|164090885|gb|ES158488.1|ES158488
genomic: CTCATTGGGAATGGGACCAATACCGTGGCTCATTATGTCTGAGgtaatgagtt ... tgataaacagATCCTTCCTGTGAACATAAAGGGTTTAGCTGGAAGTATTGCAACTCTAGCC
EST: CTTTTTCTCATTGGGAATGGGACCAATACCGTGGCTCATTATGTCTGAG ATCCTTCCTGTGAACATAAAGGGTTTAGCTGGAAGTATTGCAACTCTAGCC
genomic: CTTTTTCTCATTGGGAATGGGACCAATACCGTGGCTCATTATGTCTGAGgtaatgagtt ... tgataaacagATCCTTCCTGTGAACATAAAGGGTTTAGCTGGAAGTATTGCAACTCTAGCC
cgaaaaacttattgaactctacctttgcttgctttgtttgttgtttgataaacagATCCTTCCTGTGAACATAAAGGGTTTAGCTGGAAGTATTGCAACTCTAGCCAATTGGTTCTTTTCTTGGTTGATCACCATGACAGCAAATTTGCTGTTAG
gtttgat putative branch site (score: 5)
tttgataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgagttggttagaagttagaactaagtgttgtaagaaccgaaaagcgaaaaacttattgaactctacctttgcttgctttgtttgttgtttgataaacagATCCTTCCTGTGAACATAAAGGGTTTAGCTGGAAGTATTGCAACTCTAGCCAATTGGTTCTTTTCTTGGTTGATCACCATGACAGCAAATTTGCTGTTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT