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...ttttagagctcagattatcatcctctctctctctctcttaatacttatcttagttgtcttttattagacctggtttctgaatagtttatgcttatgacagGTGCATGAGAAGGATGTGATTGGTATAACACACCACCCGCATAGAAACCTCCTTGCTACCTATAGTGAAGATTGCACTATGAAGTTATGGAAGCCCTGAG
species | Arabidopsis thaliana |
transcript | AT1G73720.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: AACTGTACTGCTTCAACTATCAATCTGGTGGACTTGAGCATTTCATGATG GTGCATGAGAAGGEST: gi|164187450|gb|ES073695.1|ES073695
genomic: AACTGTACTGCTTCAACTATCAATCTGGTGGACTTGAGCATTTCATGATGgtaagtttat ... cttatgacagGTGCATGAGAAGG
EST: AACTGTACTGCTTCAACTATCAATCTGGTGGACTTGAGCATTTCATGATG GTGCATGAGAAGGATGTGATTG
genomic: AACTGTACTGCTTCAACTATCAATCTGGTGGACTTGAGCATTTCATGATGgtaagtttat ... cttatgacagGTGCATGAGAAGGATGTGATTG
tatcttagttgtcttttattagacctggtttctgaatagtttatgcttatgacagGTGCATGAGAAGGATGTGATTGGTATAACACACCACCCGCATAGAAACCTCCTTGCTACCTATAGTGAAGATTGCACTATGAAGTTATGGAAGCCCTGAG
tcttttatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttagagctcagattatcatcctctctctctctctcttaatacttatcttagttgtcttttattagacctggtttctgaatagtttatgcttatgacagGTGCATGAGAAGGATGTGATTGGTATAACACACCACCCGCATAGAAACCTCCTTGCTACCTATAGTGAAGATTGCACTATGAAGTTATGGAAGCCCTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - -cctctct
- - - - - - - - - - - -tctctct