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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatctctctctccacttaatttcaaatccattcctttttacttgtatgactttcagactcacgtttttggataattggtcagGATTATAAAGGGAATTCATCCAGAGGTGGCAAATGTTGCAAGCGCAGATGAGTTCGAGTACAAAGATCCAGTAGATGGCTCTGTTTCAAAGCACCAAGGG

Basic information

species Arabidopsis thaliana
transcript AT1G70730.1
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G70730.1 (Arabidopsis thaliana), 3'ss of exon 15
lower sequence: GRMZM2G023289_T03 (Zea mays), 3'ss of exon 15
------------------------------------------------------------------------------------------------gtatctctctctccacttaatttcaaatccattcctttttacttgtatgactttcagactcacgtttttgga--taattggtcagGATTATAAAGGGAATTCATCCAGAGGTGGCAAATGTTGCAAGCGCAGATGAGTTCGAGTACAAAGATCCAGTAGATGGCTCTGTTTCAAAGCACCAAGGG
                                                                                                 |     |    ||   ||  |   ||| ||  |  |   |    |     ||| |||  || || |   |      || |||||| | || ||||  || |   | || ||  |  | || |     || || ||||| |||||||| |||||||| ||||||||||| || |||||||| || 
gtaagtggaactttttcaaatgtacaggaatctcaaacttgaactttttagaaccatgtccaagtactcccgtgtatatatcaacttcagaaaattatgatagtactcccgtgtatatatcaattcaagcaatcgcaaacttgaactttttagaaccatgtctaaagtatctctttgtcagGTTGATCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGAGTTTGAGTACAAGGATCCAGTTGATGGCTCTGTGTCCAAGCACCAGGGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125092927|gb|EL150709.1|EL150709
EST:     CACTTCCCGAAGTCAACAA                         GATTATAAAGGGAATTCATCCAGAGGTGGCAAATGTTGCAAGCGCAGATGA
genomic: CACTTCCCGAAGTCAACAAgtatctctct ... aattggtcagGATTATAAAGGGAATTCATCCAGAGGTGGCAAATGTTGCAAGCGCAGATGA
EST: gi|116415466|gb|EG458058.1|EG458058
EST:     CTCATGGGACTTTTGGTTAAGTTGCAATCTTCACTTCCCGAAGTCAACAA                         GATTATAAAGGGAATTCATCCAGAGGTGGCAAATGTTGCAAGCGCAGATGA
genomic: CTCATGGGACTTTTGGTTAAGTTGCAATCTTCACTTCCCGAAGTCAACAAgtatctctct ... aattggtcagGATTATAAAGGGAATTCATCCAGAGGTGGCAAATGTTGCAAGCGCAGATGA
EST: gi|86084572|gb|DR380331.1|DR380331
EST:     TCATGGGGACTTTTGGTTAAGTTGCAATCTTCACTTCCCGAAGTCAACAA                         GATTATAAAGGGAATTCATCCAGAGGTGGCAAATGTTGCAAGCSCAGATGA
genomic: TCAT-GGGACTTTTGGTTAAGTTGCAATCTTCACTTCCCGAAGTCAACAAgtatctctct ... aattggtcagGATTATAAAGGGAATTCATCCAGAGGTGGCAAATGTTGCAAGCGCAGATGA
EST: gi|124989916|gb|EL062197.1|EL062197
EST:     CAATCTTCACTTCCCGAAGTCAACAA                         GATTATAAAGGGAATTCATCCAGAGGTGGCAAATGTTGCAAGCGCAGATGA
genomic: CAATCTTCACTTCCCGAAGTCAACAAgtatctctct ... aattggtcagGATTATAAAGGGAATTCATCCAGAGGTGGCAAATGTTGCAAGCGCAGATGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccattcctttttacttgtatgactttcagactcacgtttttggataattggtcagGATTATAAAGGGAATTCATCCAGAGGTGGCAAATGTTGCAAGCGCAGATGAGTTCGAGTACAAAGATCCAGTAGATGGCTCTGTTTCAAAGCACCAAGGG
                            gactcac  putative branch site (score: 2)
       tttttactt  TA-rich tract