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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttattctctatcagatgccaacaattttctcactttaacttcattaattttctttttcttctcaccattctctattctcattcatggataatttctgagcagATGCACTATGATAGTGACTATGGGGCTTACTTTGACTTTGGCAATCATACAGAAAAA

Basic information

species Arabidopsis thaliana
transcript AT1G67490.2
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124828892|gb|EH913728.1|EH913728
EST:     ATTACAATTCAACTGTCAAGCTGCTTTCAAATTTCAATCTTCTGAATCAG                         ATGCACTATGATAGTGACTAT
genomic: ATTACAATTCAACTGTCAAGCTGCTTTCAAATTTCAATCTTCTGAATCAGgtttattctc ... ttctgagcagATGCACTATGATAGTGACTAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttctttttcttctcaccattctctattctcattcatggataatttctgagcagATGCACTATGATAGTGACTATGGGGCTTACTTTGACTTTGGCAATCATACAGAAAAA
           ttctcac  putative branch site (score: 2)
                                            tttct  putative PPT
                                        ataatttct  TA-rich tract