Sequence
atgc intronic sequence ATGC exonic sequencegtaagtacctaactgtcctttctaggccatttttttccagagttctcatctcttatttatgtcattgaaagtggcaatgatcagcttctgataccaaattcacattgcaatttcagGATTATACCCCTTATGCTTGTTCAAAGATCATCACATCTGCTCCTGGTGCTGGGGATCATCACGGCTGCCCTTATCGACATTTCAG
Basic information
species | Arabidopsis thaliana |
transcript | AT1G67320.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G67320.2 (Arabidopsis thaliana), 3'ss of exon 15
lower sequence: GLYMA05G28150.1 (Glycine max), 3'ss of exon 15
-------------------------------------gtaagtacctaactgtcctttctaggccatttttttcca-gagttctcatctcttatttatgt-cattgaaagtg-gcaatgatcagcttctgataccaa-attcacattgcaatttcagGATTATACCCCTTATGCTTGTTCAAAGATCATCACATCTGCTCCTGGTGCTGGGGATCATCACGGCTGCCCTTATCGACATTTCAG
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gtaagttctgaatttccccactgatttatgggatgtttcaaatatatttctgttgctgattt-ccattttgaaacacaaaatttcaatgtttttgtatgcataatgcatgtatatgatgatgagtttcaacaagtaatattttgatggatgttacagGATTATACTCCCTATTCTTGTCAAAAGATTATTTCATCAACTCCTGGAGCTGGGGATCATCATGGTTGCCCCTATCGACATTTCAG
upper sequence: AT1G67320.2 (Arabidopsis thaliana), 3'ss of exon 15
lower sequence: GLYMA08G11130.1 (Glycine max), 3'ss of exon 15
------------------------------------------------gtaagtacctaactgtcctttctaggccatttttt----tccagagttctcat-ctcttatttatgtcattgaaagtggcaatgatcagcttctgataccaa-attcacattgcaatttcagGATTATACCCCTTATGCTTGTTCAAAGATCATCACATCTGCTCCTGGTGCTGGGGATCATCACGGCTGCCCTTATCGACATTTCAG
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gtaagttttgaatttcccccactgatttatgagatgttttaaatatatttctgttactgatttctattttgaaactaggctttgaaacacaaaatttcaatgtttttgtatgcataatgcatgcatattatgatgagtttcaacaagtaatattttgatggatgttacagGACTACACTCCCTATTCTTGTCAAAAGATTATTTCATCAACTCCTGGAGCTGGAGATCATCATGGTTGCCCTTATCGAAATTTCAG
upper sequence: AT1G67320.2 (Arabidopsis thaliana), 3'ss of exon 15
lower sequence: Vv05s0051g00930.t01 (Vitis vinifera), 3'ss of exon 15
gtaagtacctaactgtcctttctaggccatttttttccagagttctcatctcttatttatgtcattgaaagtggcaatgatcagcttctgataccaaattcacattgcaatttcagGATTATACCCCTTATGCTTGTTCAAAGATCATCACATCTGCTCCTGGTGCTGGGGATCATCACGGCTGCCCTTATCGACATTTCAG
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--------ctcacctttttacttaaaagtgcttaaaaataagatatgacttcctatatgtg-catgtaaaccaacaacattca-------aaacatttttgttttttcctttgcagGATTACACACCTTATTCTTGTCAAAAAATTATTTCATCAACTCCTGGTGTAGGCGATCATCACGGTTGCCCTTATCGACATTTTAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125208099|gb|EL223053.1|EL223053EST: AGTATGCGTATGCCATTCGCCATAACTATGGGAAGGAAGGCAAGAGAACA GATTATACCCCTTATGCTTGTT
genomic: AGTATGCGTATGCCATTCGCCATAACTATGGGAAGGAAGGCAAGAGAACAgtaagtacct ... gcaatttcagGATTATACCCCTTATGCTTGTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcattgaaagtggcaatgatcagcttctgataccaaattcacattgcaatttcagGATTATACCCCTTATGCTTGTTCAAAGATCATCACATCTGCTCCTGGTGCTGGGGATCATCACGGCTGCCCTTATCGACATTTCAG
ttctgat putative branch site (score: 3)
aaattca TA-rich tract