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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaccccagtagatatacttttacctgtcttttttaatgcttagatgtttggaaaaagctgactcgcttaaactggaacagGTTCAAGCAGATGTGATCAATATTCTAACAGACAAAACAGAGATTTTAACATTAGATTTATTTTCTCAATTAGCACCCGTCCTCACAGGCTTATTGGGCA

Basic information

species Arabidopsis thaliana
transcript AT1G61210.1
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116416015|gb|EG458607.1|EG458607
EST:     GTGATATTAAAGGCGCGATTGCGGCCTTAAGAAAACTGTCAGGTCACTCT                         GTTCAAGCAGATGTGATCAATATTCTAACAGACAAAACAGAGATTTTAACA
genomic: GTGATATTAAAGGCGCGATTGCGGCCTTAAGAAAACTGTCAGATCACTCTgtaagtaccc ... actggaacagGTTCAAGCAGATGTGATCAATATTCTAACAGACAAAACAGAGATTTTAACA
EST: gi|19878718|gb|AU239549.1|AU239549
EST:     GTGATATTAAAGGCGCGATTGCGGCCTTAAGAAAACTGTCAGATCACTCT                         GTTCAAGCAGATGTGATCAATATTCTAACAGACAAAACAGAGATTTTAACA
genomic: GTGATATTAAAGGCGCGATTGCGGCCTTAAGAAAACTGTCAGATCACTCTgtaagtaccc ... actggaacagGTTCAAGCAGATGTGATCAATATTCTAACAGACAAAACAGAGATTTTAACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcttttttaatgcttagatgtttggaaaaagctgactcgcttaaactggaacagGTTCAAGCAGATGTGATCAATATTCTAACAGACAAAACAGAGATTTTAACATTAGATTTATTTTCTCAATTAGCACCCGTCCTCACAGGCTTATTGGGCA
                              agctgac  putative branch site (score: 3)
 ttttaat  TA-rich tract