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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gaagttctttagggggtgataaatattatttatgagaggcagtagtgatggttggtgcagtatatggattaattctttttattgatattgctcttaacagGAGGCCTACTTCACTCCATGATCGTAGTAGAGATAGTGATGATGATGATTACCACGATAGAGATTATGATGTGGCAGCCCTAGCAAACAATTTGAGCCAG

Basic information

species Arabidopsis thaliana
transcript AT1G30470.2
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G30470.2 (Arabidopsis thaliana), 3'ss of exon 15
lower sequence: LOC_Os01g40340.1 (Oryza sativa), 3'ss of exon 13
gaagttctttagggggtgataaatattatttatgagaggc---agtagtgatggttggtgcagtatatggattaa---ttctttttattgatattgctcttaacagGAGGCCTACTTCACTCCATGATCGTAGTAGAGATAGTGATGATGATGATTACCACGATAGAGATTATGATGTGGCAGCCCTAGCAAACAATTTGAGCCAG
         || | |    |   | || || ||   | ||   | | |      ||| | | || | |  | | |    | | | |||   | ||| |  |  |||| | || || ||||| ||||| ||| |||| ||||||||||||||||| | ||  || || ||||||||||||||||| || || || || |||||||||
--------gtatgtgactgtttctttttttgattgcatgctaaacttgcatgtcttgcttctgttttttcactgaatagtttatctatatgtcttgttgctg-cagGCGCCCAACATCACTTCATGACCGTGGTAGGGATAGTGATGATGATGACTTCCGAGACAGGGATTATGATGTGGCAGCTCTTGCTAATAACTTGAGCCAG

upper sequence: AT1G30470.2 (Arabidopsis thaliana), 3'ss of exon 15
lower sequence: LOC_Os01g40390.1 (Oryza sativa), 3'ss of exon 4
-gaagttctttagggggtgataaatattatttatgagaggcagtagtgatggttggtgcagtat-atggattaattctttttattgatattgctcttaacagGAGGCCTACTTCACTCCATGATCGTAGTAGAGATAGTGATGATGATGATTACCACGATAGAGATTATGATGTGGCAGCCCTAGCAAACAATTTGAGCCAG
 |    |||||      |  |    ||    |   |      |  ||  | | |  ||   | | |  || || || | | |||   | ||| |  |  ||||   || || ||||| ||||| | | |||| ||||||||||||||||||| ||  || || ||||||||||||||||| || || || || |||||||||
tgtgactctttgttttttttttttgatggcatgctaaccttggatgtctttgcttctgttttttcactgaatagtt-tctctatatgtcttgttgctg-cagGCACCCAACATCACTTCATGACCATGGTAGGGATAGTGATGATGATGATTTCCGAGACAGGGATTATGATGTGGCAGCTCTTGCTAATAACTTGAGCCAG

upper sequence: AT1G30470.2 (Arabidopsis thaliana), 3'ss of exon 15
lower sequence: Vv10s0003g04630.t01 (Vitis vinifera), 3'ss of exon 15
gaagttctttagggggtgataaatattatttatgagaggcagtagtgatggttggtgcagtatatggattaat---tctttttattgatattgctcttaacagGAGGCCTACTTCACTCCATGATCGTAGTAGAGATAGTGATGATGATGATTACCACGATAGAGATTATGATGTGGCAGCCCTAGCAAACAATTTGAGCCAG
 || ||    |     | |  | |||||    | | ||  | | ||| |  ||    |    | |||  | ||   |  | | | |   ||   |  ||||||||| |||||  | || || ||||| | ||| |||||||||||||||||||| || || |||||||||||||| ||||| |||||||| || ||||| |||
-aaattagagaaccaattacta-tattaac-gtaatagaaaatggtgttatttcccccctcttttggtctgatatgtaatctgagtttcatcaattgtaacagGAGACCTACAGCTCTACAGGATCGAACTAGGGATAGTGATGATGATGATTATCAAGACAGAGATTATGATGTTGCAGCTCTAGCAAATAACTTGAGTCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatggttggtgcagtatatggattaattctttttattgatattgctcttaacagGAGGCCTACTTCACTCCATGATCGTAGTAGAGATAGTGATGATGATGATTACCACGATAGAGATTATGATGTGGCAGCCCTAGCAAACAATTTGAGCCAG
                                  tattgat  putative branch site (score: 3)
                                          ttgctctt  CT-rich tract
               tatatggattaattct  TA-rich tract