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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtcaaatatcatggaaaagaacttcctatttagttagatattgagatctgtgatactttttggtttcagGTTGATCGAACTCCTCTGCCTTTACTCTTCATGCGAACGGTTATCCAGGCAATCGATGCTTTTCCAACACTA

Basic information

species Arabidopsis thaliana
transcript AT1G27595.1
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G27595.1 (Arabidopsis thaliana), 3'ss of exon 15
lower sequence: GLYMA04G09480.1 (Glycine max), 3'ss of exon 21
----gtatgtcaaatatcatggaaaagaacttcctatttagtt-agatattgagatctgtgatactttttggtttcagGTTGATCGAACTCCTCTGCCTTTACTCTTCATGCGAACGGTTATCCAGGCAATCGATGCTTTTCCAACACTA
    | |  |    | |  |||  || ||      ||||| || | || || |   || |  |  |||    ||||||||||||| |||||| |||||| |||| |||||| |||| ||||| |||||||| |||||||||||  || | 
gtaaggagattctgtgtattgggcaataatactggatttacttcaaatcttaatggctatattg-tttaaattttcagGTTGATCAAACTCCGCTGCCTCTACTTTTCATGAGAACAGTTATTCAGGCAATTGATGCTTTTCCTGCAATG

upper sequence: AT1G27595.1 (Arabidopsis thaliana), 3'ss of exon 15
lower sequence: GLYMA06G09580.1 (Glycine max), 3'ss of exon 20
----gtatgtcaaatatcatggaaaagaacttcctatttagtt-agatattgagatctgtgatactttttggtttcagGTTGATCGAACTCCTCTGCCTTTACTCTTCATGCGAACGGTTATCCAGGCAATCGATGCTTTTCCAACACTA
    | |  |  | |    |||  || ||      ||||| || | || || |   || |  |  |||    ||||||||||||| |||||| |||||  |||| |||||| |||| ||||| |||||||| |||||||||||  |||| 
gtaaggagattcagtgcattggccaataatactggatttacttcaaatcttcatggctctattg-tttaaattttcagGTTGATCAAACTCCACTGCCGCTACTTTTCATGAGAACAGTTATTCAGGCAATTGATGCTTTTCCTGCACTG

upper sequence: AT1G27595.1 (Arabidopsis thaliana), 3'ss of exon 15
lower sequence: Vv18s0001g08140.t01 (Vitis vinifera), 3'ss of exon 17
gtatgtcaaatatcatggaaaagaacttcc-----tatttagttagatattgagatct--------gtgatactttttggtttcagGTTGATCGAACTCCTCTGCCTTTACTCTTCATGCGAACGGTTATCCAGGCAATCGATGCTTTTCCAACACTA
|||||| |||  |  |  |   | | |||      ||||    |  | ||| | ||||        || |    |     |||||||||||||  |||||  ||||| ||||||||||| |||| || || |||||||| ||||||| ||| || || 
gtatgtgaaa-gttgtccatttgcaattctgaaattattggacttaaaattaatatcttgcttgtagtaacctatccaattttcagGTTGATCATACTCCATTGCCTCTACTCTTCATGAGAACAGTAATTCAGGCAATTGATGCTTATCCTACCCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaagaacttcctatttagttagatattgagatctgtgatactttttggtttcagGTTGATCGAACTCCTCTGCCTTTACTCTTCATGCGAACGGTTATCCAGGCAATCGATGCTTTTCCAACACTA
                                       tacttttt  CT-rich tract
            tatttagttagatatt  TA-rich tract