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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgctcatattgatctctgaaacaaacatgtgtttttcttttatcattctctagatagttaggtctcctagggtatttgagaaaagacaaaaataacttggatagatgattcctaatgcagCATTGTCACTGTTCATGTTCGTGGCAAGGACTTGAAGACTGGTTCTGCGCTGTATGGAAATCTACATTTGGTAGATCTAGCAGGTAGTGAGAGAGTTGAT

Basic information

species Arabidopsis thaliana
transcript AT1G18410.1
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G18410.1 (Arabidopsis thaliana), 3'ss of exon 15
lower sequence: GLYMA05G35130.1 (Glycine max), 3'ss of exon 14
gtgctcatattgatctctgaaacaaacatgtgtttttcttttatcattctctagatagttaggtctcctagggtatttgagaaaagacaaaaataacttggatagatgattcctaatgcagCATTGTCACTGTTCATGTTCGTGGCAAGGACTTGAAGACTGGTTCTGCGCTGTATGGAAATCTACATTTGGTAGATCTAGCAGGTAGTGAGAGAGTTGAT
                                    | ||||  | ||   |  | | |||     | | |         |     |  |  |||||    ||  |   ||    |  |||  ||||| |  ||||| ||||||| ||||||||||||||||||||| |  ||  ||| ||||| |||||||||||| | ||||| ||||| || || |||
--------------------------gtcacaccacttttttcccctttctttaagatttaa----cattgaaagcaaaggcgtctattatgataacacc-atgtaaacttatgtacacagTGTTGTCTCAATTCATATTCGTGGGAAGGACTTGAAGACTGGTTCTACTATGGTTGGTAATCTTCATTTGGTAGATTTGGCAGGAAGTGAAAGGGTAGAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctagggtatttgagaaaagacaaaaataacttggatagatgattcctaatgcagCATTGTCACTGTTCATGTTCGTGGCAAGGACTTGAAGACTGGTTCTGCGCTGTATGGAAATCTACATTTGGTAGATCTAGCAGGTAGTGAGAGAGTTGAT
                                            tcctaat  putative branch site (score: 2)
                                           ttcct  CT-rich tract
               aaaagacaaaaataa  TA-rich tract