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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttgcatgtttcttgtctttttttgacaaaccatctgttgtgtttcagattctaatccctttgcgggaatgttatcgacttgcagGTCCGATCCAATTCACTGGACCTGGTTCAGACTCTCTCAGCCACACTCTACTTCTTGAACTCGGGGCTCAATAGTCTCTCGACTAACCACCATTCCTTTG

Basic information

species Arabidopsis thaliana
transcript AT1G12000.1
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86088437|gb|DR384196.1|DR384196
EST:     CGCATCACTGCGTGAAGAATGGGCATTGAAGAACCGATACATCAGCCCAG                         GTCCGATCCAATTCACTGGACCTGGTTCAGACTCTCTCAGCCACACTCTAC
genomic: CGCATCACTGCGTGAAGAATGGGCATTGAAGAACCGATACATCAGCCCAGgtttgttgca ... cgacttgcagGTCCGATCCAATTCACTGGACCTGGTTCAGACTCTCTCAGCCACACTCTAC
EST: gi|86060419|gb|DR356176.1|DR356176
EST:     GCATCACTGCGTGAAGAATGGGCATTGAAGAACCGATAACATCAGCCCAG                         GTCCGATCCAATTCACCTGGACCTGGTTCAGACTCTCTCAGCCACACTCTA
genomic: GCATCACTGCGTGAAGAATGGGCATTGAAGAACCGATA-CATCAGCCCAGgtttgttgca ... cgacttgcagGTCCGATCCAATTCAC-TGGACCTGGTTCAGACTCTCTCAGCCACACTCTA
EST: gi|125190594|gb|EL205548.1|EL205548
EST:     ATTGAAGAACCGATACATCAGCCCAG                         GTCCGATCCAATTCACTGGACCTGGTTCAGACT
genomic: ATTGAAGAACCGATACATCAGCCCAGgtttgttgca ... cgacttgcagGTCCGATCCAATTCACTGGACCTGGTTCAGACT
EST: gi|164209295|gb|ES164096.1|ES164096
EST:     ATTGAAGAACCGATACATCAGCCCAG                         GTCCGATCCAATTCACTGGACCTGGTTCAGACTCTACTCAGCCACACTCTA
genomic: ATTGAAGAACCGATACATCAGCCCAGgtttgttgca ... cgacttgcagGTCCGATCCAATTCACTGGACCTGGTTCAGACTCT-CTCAGCCACACTCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccatctgttgtgtttcagattctaatccctttgcgggaatgttatcgacttgcagGTCCGATCCAATTCACTGGACCTGGTTCAGACTCTCTCAGCCACACTCTACTTCTTGAACTCGGGGCTCAATAGTCTCTCGACTAACCACCATTCCTTTG
                   ttctaat  putative branch site (score: 2)
                  attctaat  TA-rich tract