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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataccaacattaatatttcatgtttttattaagatatttgtctaagaaatgttactaacgatgtgtgaactatatatgaccaaaatttatagcatagtggggttagttagacccaagtttcaaccagaaatgtgaatttggagctatatacaaaaacagcaacaacagaatctaataaaattttattttgcttgcagATATTTCCGATGAATGTGAAAGTGTCAGCTGGGACCTTAGTTACTGTAACCAATTGGTTATTTGGTTGGATTATCACATACACTTTCAATTTTATGCTAG

Basic information

species Arabidopsis thaliana
transcript AT1G08930.1
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124791240|gb|EH880919.1|EH880919
EST:     TGTCATTTGCCATGGGAATGGGAGGACTACCATGGATTATAATGGCTGAG                         ATATTTCCGATGAATGTGAAAGTG
genomic: TGTCATTTGCCATGGGAATGGGAGGACTACCATGGATTATAATGGCTGAGgtataccaac ... ttgcttgcagATATTTCCGATGAATGTGAAAGTG
EST: gi|86059161|gb|DR354918.1|DR354918
EST:     TGTCATTTGCCATGGGAATGGGAGGACTACCATGGATTATAATGGCTGAC                         ATATTTCCGATGAATGTGAAAGTGTCACCTGGGACCTTAGTTACTGTAACC
genomic: TGTCATTTGCCATGGGAATGGGAGGACTACCATGGATTATAATGGCTGAGgtataccaac ... ttgcttgcagATATTTCCGATGAATGTGAAAGTGTCAGCTGGGACCTTAGTTACTGTAACC
EST: gi|124865560|gb|EH949997.1|EH949997
EST:     TGTCATTTGCCATGGGAATGGGAGGACTACCATGGATTATAATGGCTGAG                         ATATTTCCGATGAATGTGAAAGTGTCAGCTGGGACCTTAG
genomic: TGTCATTTGCCATGGGAATGGGAGGACTACCATGGATTATAATGGCTGAGgtataccaac ... ttgcttgcagATATTTCCGATGAATGTGAAAGTGTCAGCTGGGACCTTAG
EST: gi|124914922|gb|EH988796.1|EH988796
EST:     TGTCATTTGCCATGGGAATGGGAGGACTACCATGGATTATAATGGCTGAG                         ATATTTCCGATGAATGTGAAAGTGTCAGCTGGGA
genomic: TGTCATTTGCCATGGGAATGGGAGGACTACCATGGATTATAATGGCTGAGgtataccaac ... ttgcttgcagATATTTCCGATGAATGTGAAAGTGTCAGCTGGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctatatacaaaaacagcaacaacagaatctaataaaattttattttgcttgcagATATTTCCGATGAATGTGAAAGTGTCAGCTGGGACCTTAGTTACTGTAACCAATTGGTTATTTGGTTGGATTATCACATACACTTTCAATTTTATGCTAG
                           atctaat  putative branch site (score: 3)
                                      ttttatttt  putative PPT
                  aacaacagaatctaat  TA-rich tract