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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagcatttacatatgtgtatccctatcatcataatatacttccatctcgcttgtcacctataccattgggtattaaagatagccatctcgactagaaatgcctattatggaaatagcttttgctgtaagtttggagttttttttttcagGTAACAGGGATAAGATTTATGTGGGAAAATATTATTCAGTCTATCAGCAGAGTCAAGTCTGGTGATAAAGGTCTTGGTTGCATTCTAGCACATACAATGG

Basic information

species Arabidopsis thaliana
transcript AT1G08600.1
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G08600.2 (Arabidopsis thaliana), 3'ss of exon 15
lower sequence: LOC_Os10g31970.1 (Oryza sativa), 3'ss of exon 13
gttagcatttacatatgtgtatccctatcatcataatatacttccatctcgcttgtcacctataccattgggtattaaagatagccatctcgactagaaatgcctattatggaaatagcttttgctgtaagtttggagttttttttttcagGTAACAGGGATAAGATTTATGTGGGAAAATATTATTCAGTCTATCAGCAGAGTCAAGTCTGGTGATAAAGGTCTTGGTTGCATTCTAGCACATACAATGG
                                     ||    |  | ||||   ||||| ||  || |||  || |    |   ||  |  ||    |    || |||  | ||        |||  ||   |  |   |  | ||||||||| |||| ||||||||||||||||||||| | || || ||| |||  |  ||||| ||||| ||||||||| ||||||||||| | || || |  ||||
---------------------------------gttcatgtgccagtatcgc--atcacc-atcacactggtcatgatttctgtacagttgtacctata----ctgttacaggaa--------gctaaaa---tatatcatgatatttcagGTATCAGGAATAAGATTTATGTGGGAAAATGTGATCCAATCTGTCAAGAAGGTCAAATCTGGGGATAAAGGTTTTGGTTGCATTTTGGCTCACAACATGG

upper sequence: AT1G08600.2 (Arabidopsis thaliana), 3'ss of exon 15
lower sequence: GLYMA20G37100.1 (Glycine max), 3'ss of exon 17
gttagcatttacatatgtgtatccctatcatcataatatacttccatctcgcttgtcacctataccattgggtattaaagatagccatctcgactagaaatgcctattatggaaatagc-ttttgctgtaagtt--tggagttttttttttcagGTAACAGGGATAAGATTTATGTGGGAAAATATTATTCAGTCTATCAGCAGAGTCAAGTCTGGTGATAAAGGTCTTGGTTGCATTCTAGCACATACAATGG
                                                    ||| ||  ||| | |     | | ||   |   |||   |  |     |   |    ||||  | |  |||| ||  || ||  |    ||  | ||| ||| | || || |||||||| |||||||||||||| || ||||| ||||| | ||| |||||||| |||||||||||||| || |||||||| ||||| ||||
--------------------------------------------------tattgccatttattcaagcatctttgaagtttttacattgtgtttgttggttttt----tggatttggtatttttctacaatttaatttgtttgatgtttgcagATTACTGGAATAAGATTCATGTGGGAAAATATAATACAGTCAATCAGAAAAGTAAAGTCTGGGGATAAAGGTCTTGGATGTATTCTAGCTCATACCATGG

upper sequence: AT1G08600.2 (Arabidopsis thaliana), 3'ss of exon 15
lower sequence: Vv14s0036g01460.t01 (Vitis vinifera), 3'ss of exon 12
gttagcatttacatatgtgtatccctatcatcataatatacttccatctcgcttgtcacctat--accattgggtattaaagatagccatctcgactagaaatgcctattatggaaatagcttttgctgtaagtttgga--gttttttttttcagGTAACAGGGATAAGATTTATGTGGGAAAATATTATTCAGTCTATCAGCAGAGTCAAGTCTGGTGATAAAGGTCTTGGTTGCATTCTAGCACATACAATGG
                                                       | | |||   | |||   |   | |  |||    | |    |     |   | || |     |   ||||  || ||  ||     |||  ||  ||||| | ||||||||| |||||||||||||||||||||| ||||| || || | ||| || |||||||||||||||||||||||||||||||| || || ||||
-------------------------------------------------------taaactaatgatcatgaaggtgttagtatattggtgttttgtttgttttttttttgtttttttttgttttaatgaaatcttatcttgttcattccttcagATCACAGGGATACGATTTATGTGGGAAAATATTATCCAGTCCATTAGAAAAGTGAAATCTGGTGATAAAGGTCTTGGTTGCATTCTAGCTCACACCATGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaatgcctattatggaaatagcttttgctgtaagtttggagttttttttttcagGTAACAGGGATAAGATTTATGTGGGAAAATATTATTCAGTCTATCAGCAGAGTCAAGTCTGGTGATAAAGGTCTTGGTTGCATTCTAGCACATACAATGG
                                          ttttttttttc  CT-rich tract
                                        agttttttttttca  TA-rich tract