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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccagtcaacttatacttggtggaaatgtcaagtttaatatcaataatcctcatctaacataaattttcaatccagGTGTATGAGGCTGCTCGGCGTGCTGCAATTCATGAAACAATCAGTAATTTCCCTGATAAATATTCCACGATCGTTGGGGAAAGGGGGCTCAAG

Basic information

species Arabidopsis thaliana
transcript AT5G58270.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G58270.1 (Arabidopsis thaliana), 3'ss of exon 14
lower sequence: Vv06s0004g08350.t01 (Vitis vinifera), 3'ss of exon 18
-----------------------gtaccagtcaacttatacttggtggaaatgtcaagtttaatatcaata--atcctcatctaacat--aaattttcaatcca--gGTGTATGAGGCTGCTCGGCGTGCTGCAATTCATGAAACAATCAGTAATTTCCCTGATAAATATTCCACGATCGTTGGGGAAAGGGGGCTCAAG
                        ||| | |    || ||  ||      |||  | ||      |   |    |  |   |||| ||  ||||| |   ||||  ||||||||| |||||||| ||||| ||||||||||| || ||||  ||||||||||| |||||||| ||  | || || ||| |||||||||||
gtttgaaacgaactctgttaattttactaatgtgttt-tatctgaaaatcatgcaatgtcatgcttggttgttgtattagactaatatttaaattattgctccacagGTGTATGATGCTGCTCGACGTGCAGCAATTCATGACACTATCATGAATTTCCCTGAGAAATATTCAACTGTTGTGGGAGAACGGGGGCTCAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggaaatgtcaagtttaatatcaataatcctcatctaacataaattttcaatccagGTGTATGAGGCTGCTCGGCGTGCTGCAATTCATGAAACAATCAGTAATTTCCCTGATAAATATTCCACGATCGTTGGGGAAAGGGGGCTCAAG
                               atctaac  putative branch site (score: 2)
                                           ttttc  putative PPT
         aagtttaatatcaata  TA-rich tract