Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatctcttagttcttcttcttgaatcctctgaatcattaacaaaatctgcaactttattcttacaaaatttctctgtcggttttcagGTTACGGCTTCTAAGTTGGCAATTGAGAACAGAGTAGTCCCTGATGAAGCAAAAGCCACGACCAAGTTCTTCACTTCCTGATCTGAAACTTCTTTAAGCC

Basic information

species Arabidopsis thaliana
transcript AT5G56500.2
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125314358|gb|EL328443.1|EL328443
EST:     CAGCAGCTCCTGCTGGTAACCCTATGGACAATTCAG                         GTTACGGCTTCTAAGTTGGCAATTGAGAACAGAGTAGTCCCTGATGAAGCA
genomic: CAGCAGCTCCTGCTGGTAACCCTATGGACAATTCAGgtatctctta ... cggttttcagGTTACGGCTTCTAAGTTGGCAATTGAGAACAGAGTAGTCCCTGATGAAGCA
EST: gi|19741701|gb|AU227054.1|AU227054
EST:     TGGTAACCCTATGGACAATTCAG                         GTTACGGCTTCTAAGTTGGCAATTGAGAACAGAGTAGTCCCTGATGAAGCA
genomic: TGGTAACCCTATGGACAATTCAGgtatctctta ... cggttttcagGTTACGGCTTCTAAGTTGGCAATTGAGAACAGAGTAGTCCCTGATGAAGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcattaacaaaatctgcaactttattcttacaaaatttctctgtcggttttcagGTTACGGCTTCTAAGTTGGCAATTGAGAACAGAGTAGTCCCTGATGAAGCAAAAGCCACGACCAAGTTCTTCACTTCCTGATCTGAAACTTCTTTAAGCC
                         ttcttac  putative branch site (score: 2)
                                    tttctctgtc  putative PPT
                  aactttattcttacaa  TA-rich tract