1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtaagttcttatcgtaacctacatctcacgggtcatcatctccttttatctccagtttttctttttatatccttaaatttttactctcttgttgcagATATGCGGCCATCTTATCTACTCCAGCTCGGTGTTTGGAAGACAAACTTAAA
species | Arabidopsis thaliana |
transcript | AT5G56360.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: TGTGGGTTGAAAAATGAGCTTATGGATGTCGATGAACCAAGCCGTTGCGA ATATGCGGCCATCTTATCTACTCCAGCTCGGTGTTEST: gi|86077558|gb|DR373315.1|DR373315
genomic: TGTGGGTTGAAAAATGAGCTTATGGATGTCGATGAACCAAGCCGTTGCGAgtaagttctt ... cttgttgcagATATGCGGCCATCTTATCTACTCCAGCTCGGTGTT
EST: TGTGGGTTGAAAAATGAGCTTATGGATGTCGATGAACCAAGCCGTTGCGA ATATGCGGCCATCTTATCTACTCCAGCTCGGTGTTTGGAAGACAAACTTAA
genomic: TGTGGGTTGAAAAATGAGCTTATGGATGTCGATGAACCAAGCCGTTGCGAgtaagttctt ... cttgttgcagATATGCGGCCATCTTATCTACTCCAGCTCGGTGTTTGGAAGACAAACTTAA
cttttatctccagtttttctttttatatccttaaatttttactctcttgttgcagATATGCGGCCATCTTATCTACTCCAGCTCGGTGTTTGGAAGACAAACTTAAA
tttttactctcttgtt CT-rich tract
agtttttctttttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttcttatcgtaacctacatctcacgggtcatcatctccttttatctccagtttttctttttatatccttaaatttttactctcttgttgcagATATGCGGCCATCTTATCTACTCCAGCTCGGTGTTTGGAAGACAAACTTAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA