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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggcttcttctcgttgattggccttaaaattattcatgtgtggaaatgatttatatataggaactaagtctttgttttatgtatttctctctagTCTCTTATGCTTGTGACATCATTGAATCCT

Basic information

species Arabidopsis thaliana
transcript AT5G50950.2
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86080103|gb|DR375860.1|DR375860
EST:     TTAGAGGCATTGAGGCCAACAGAGAAAGGATCTCAAAGCTATTGCACGAG                         TCTCTTATGCTTGTGACATCATTGAATCCT
genomic: TTAGAGGCATTGAGGCCAACAGAGAAAGGATCTCAAAGCTATTGCACGAGgtaggcttct ... ttctctctagTCTCTTATGCTTGTGACATCATTGAATCCT
EST: gi|116428257|gb|EG470849.1|EG470849
EST:     TTAGAGGCATTGAGGCCAACAGAGAAAGGATCTCAAAGCTATTGCACGAG                         TCTCTTATGCTTGTGACATCATTGAATCCT
genomic: TTAGAGGCATTGAGGCCAACAGAGAAAGGATCTCAAAGCTATTGCACGAGgtaggcttct ... ttctctctagTCTCTTATGCTTGTGACATCATTGAATCCT
EST: gi|86075192|gb|DR370949.1|DR370949
EST:     TTAGAGGCATTGAGGCCAACAGAGAAAGGATCTCAAAGCTATTGCACGAG                         TCTCTTATGCTTGTGACATCATTGAATCCT
genomic: TTAGAGGCATTGAGGCCAACAGAGAAAGGATCTCAAAGCTATTGCACGAGgtaggcttct ... ttctctctagTCTCTTATGCTTGTGACATCATTGAATCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtggaaatgatttatatataggaactaagtctttgttttatgtatttctctctagTCTCTTATGCTTGTGACATCATTGAATCCT
                                          tatttctctct  CT-rich tract
     aatgatttatatata  TA-rich tract