1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtttgttttgtcccttctttgcatcgaaaacttggttcaattttgtctgttattaatgaatttgagatgaaatgattctgcagATAGAGGACATCGTTCGTGCATCAAAGAGAGCTTGTTACAGATCGAAATAAAATCGTCAACATCAACACATTTCTTCTTTGATCTTTAAAGGGAAAGGAA
species | Arabidopsis thaliana |
transcript | AT5G50850.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: TTGGCTCTTCCTCAG ATAGAGGACATCGTTCGTGCATCAAAGAGAGCTTGTTACAGATCGAAATAAEST: gi|125281991|gb|EL296076.1|EL296076
genomic: TTGGCTCTTCCTCAGgtttgttttg ... gattctgcagATAGAGGACATCGTTCGTGCATCAAAGAGAGCTTGTTACAGATCGAAATAA
EST: ATGTTCCAATGCCGTATGCAGCTAACCTAGAGAGATTGGCTCTTCCTCAG ATAGAGGACATCGTTCGTGCATCAAAGAGAGEST: gi|124737379|gb|EH828781.1|EH828781
genomic: ATGTTCCAATGCCGTATGCAGCTAACCTAGAGAGATTGGCTCTTCCTCAGgtttgttttg ... gattctgcagATAGAGGACATCGTTCGTGCATCAAAGAGAG
EST: CTAGAGAGATTGGCTCTTCCTCAG ATAGAGGACATCGTTCGTGCATCAAAGAGAGCTTGTTACAGATCGAAATAAEST: gi|124818577|gb|EH903443.1|EH903443
genomic: CTAGAGAGATTGGCTCTTCCTCAGgtttgttttg ... gattctgcagATAGAGGACATCGTTCGTGCATCAAAGAGAGCTTGTTACAGATCGAAATAA
EST: GTTCCAATGCCGTATGCAGCTAACCTAGAGAGATTGGCTCTTCCTCAG ATAGAGGACATCGTTCGTGCATTAAAGAGAGCTTGTTACAGATCGAAA
genomic: GTTCCAATGCCGTATGCAGCTAACCTAGAGAGATTGGCTCTTCCTCAGgtttgttttg ... gattctgcagATAGAGGACATCGTTCGTGCATCAAAGAGAGCTTGTTACAGATCGAAA
aacttggttcaattttgtctgttattaatgaatttgagatgaaatgattctgcagATAGAGGACATCGTTCGTGCATCAAAGAGAGCTTGTTACAGATCGAAATAAAATCGTCAACATCAACACATTTCTTCTTTGATCTTTAAAGGGAAAGGAA
tattaat putative branch site (score: 2)
tgttattaatgaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgttttgtcccttctttgcatcgaaaacttggttcaattttgtctgttattaatgaatttgagatgaaatgattctgcagATAGAGGACATCGTTCGTGCATCAAAGAGAGCTTGTTACAGATCGAAATAAAATCGTCAACATCAACACATTTCTTCTTTGATCTTTAAAGGGAAAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA