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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaaataaattttctaaattatatactaccccaataggctttatatatctaattgatgccttctgttccttcatgttatcttcaacatattttctttccatctctctgcagAATCAAAGGCGATCAACAACATTTCGTTCGTAGAGACGAATTAAAG

Basic information

species Arabidopsis thaliana
transcript AT5G40760.1
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19741249|gb|AU226602.1|AU226602
EST:     CCTGAGGGCATACGAGCGCTTAATTCTTGACAC                         AATCAAAGGCGATCAACAACATTTCGTTCGTAGAGACGAATTAAAG
genomic: CCTGA-GGCATACGAGCGCTTAATTCTTGACACgtaagaaata ... ctctctgcagAATCAAAGGCGATCAACAACATTTCGTTCGTAGAGACGAATTAAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgccttctgttccttcatgttatcttcaacatattttctttccatctctctgcagAATCAAAGGCGATCAACAACATTTCGTTCGTAGAGACGAATTAAAG
                             catattttctttccat  CT-rich tract
                           aacatattttcttt  TA-rich tract