1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtgagtacagaatcattgcatcagtgaaaaacatttagctaaatgaattctagccttatctttatatattgtgatactatttcacaatccaccgaattctcttcaaatgcatgatgcaggatgaataccttataaacaactgataattcatagaagtttggattggcttttcttaacgcagGTGGCTGATTTAAAAATGTTGAAAGAAGAAGGTCATAAATTTGAATCCCGTTATATCGACAATCTTGTTG
species | Arabidopsis thaliana |
transcript | AT5G36210.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: CATCATTGGCGTTCAGGGATGTTTTCAAAGCTGGAGCGTCCTTATACGGA GTGGCTGATTTAAAAAEST: gi|86087244|gb|DR383003.1|DR383003
genomic: CATCATTGGCGTTCAGGGATGTTTTCAAAGCTGGAGCGTCCTTATACGGAgtgagtacag ... cttaacgcagGTGGCTGATTTAAAAA
EST: CATCATTGGCGTTCAGGGATGTTTTCAAAGCTGGAGCGTCCTTATACGGA GTGGCTGATTTAAAAATGTTGAAAGAAGAAGGTCATAAATTTGAATCCCGTEST: gi|86087701|gb|DR383460.1|DR383460
genomic: CATCATTGGCGTTCAGGGATGTTTTCAAAGCTGGAGCGTCCTTATACGGAgtgagtacag ... cttaacgcagGTGGCTGATTTAAAAATGTTGAAAGAAGAAGGTCATAAATTTGAATCCCGT
EST: CATCATTGGCGTTCAGGGATGTTTTCAAAGCTGGAGCGTCCTTATACGGA GTGGCTGATTTAAAAATGTTGAAAGAAGAAGGTCATAAATTTGAATCCCGT
genomic: CATCATTGGCGTTCAGGGATGTTTTCAAAGCTGGAGCGTCCTTATACGGAgtgagtacag ... cttaacgcagGTGGCTGATTTAAAAATGTTGAAAGAAGAAGGTCATAAATTTGAATCCCGT
accttataaacaactgataattcatagaagtttggattggcttttcttaacgcagGTGGCTGATTTAAAAATGTTGAAAGAAGAAGGTCATAAATTTGAATCCCGTTATATCGACAATCTTGTTG
tcttaac putative branch site (score: 2)
cttttctt CT-rich tract
ataattcata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtacagaatcattgcatcagtgaaaaacatttagctaaatgaattctagccttatctttatatattgtgatactatttcacaatccaccgaattctcttcaaatgcatgatgcaggatgaataccttataaacaactgataattcatagaagtttggattggcttttcttaacgcagGTGGCTGATTTAAAAATGTTGAAAGAAGAAGGTCATAAATTTGAATCCCGTTATATCGACAATCTTGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG