Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacattcccctcctgctgaattttgtttcttatttctttatatggaaataagaatctagtcgtgaacgaacttctaatgcagGAGCAAAGCAGCCAAATTACCTTGTCACTGCTGATGATGTTGATTTATATCTTGCTATTGAGGTTCAGCCTTTGGATGACAGGAACCGAAAG

Basic information

species Arabidopsis thaliana
transcript AT5G23490.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G23490.1 (Arabidopsis thaliana), 3'ss of exon 14
lower sequence: Vv07s0130g00420.t01 (Vitis vinifera), 3'ss of exon 14
-----gtacattcccc----tcctgctgaattttgtttcttat-------ttctttatatggaaataagaatctagtcgtgaacgaacttctaatg-cagGAGCAAAGCAGCCAAATTACCTTGTCACTGCTGATGATGTTGATTTATATCTTGCTATTGAGGTTCAGCCTTTGGATGACAGGAACCGAAAG
      | | ||||||      ||   ||| |||  || | ||       || ||| |    |   ||||||   |   | ||  |  |||| ||| ||||||| ||||| |||||||| |||||||| ||||||||||||||   ||| ||||| ||||| || |||||| ||||| | ||||  || |||
gtatttttctttccccagttctctttggaaattttcttttcatagcatcattttttgtcctaactcaagaat--ggatcttaagaagtttctgatgacagGAGCCAAGCAACCAAATTATCTTGTCACGGCTGATGATGTTGACACATACCTTGCAATTGAAGTACAGCCTCTGGATCATAGGATGCGGAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttatttctttatatggaaataagaatctagtcgtgaacgaacttctaatgcagGAGCAAAGCAGCCAAATTACCTTGTCACTGCTGATGATGTTGATTTATATCTTGCTATTGAGGTTCAGCCTTTGGATGACAGGAACCGAAAG
                                            ttctaat  putative branch site (score: 2)
                                           cttct  CT-rich tract
         tttatatggaaataa  TA-rich tract