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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttctcaactaatctttatctaggcttagctgttacaattatatcattgacttgtctctttgtttctgatcactgattcagTCTCTCCAACTTGATGAAAAAGATAACCATCCAAGAGCCAACCTTTGAGAGAATCATTGTAGTATACAG

Basic information

species Arabidopsis thaliana
transcript AT5G13940.1
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116480284|gb|EG522876.1|EG522876
EST:     AAGGATAGTTTATACATCGAAAGAATCCGCATAGAGAAGCTCAAGCTCAG                         TCTCTCCAACTTGATGAAAAAGATAACCATCCAAGAGCCAACCTTTGAGAG
genomic: AAGGATAGTTTATACATCGAAAGAATCCGCATAGAGAAGCTCAAGCTCAGgttctcaact ... actgattcagTCTCTCCAACTTGATGAAAAAGATAACCATCCAAGAGCCAACCTTTGAGAG
EST: gi|116481915|gb|EG524507.1|EG524507
EST:     AAGGATAGTTTATACATCGAAAGAATCCGCATAGAGAAGCTCAAGCTCAG                         TCTCTCCAACTTGATGAAAAAGATAACCATCCAAGAGCCAACCTTTGAGAG
genomic: AAGGATAGTTTATACATCGAAAGAATCCGCATAGAGAAGCTCAAGCTCAGgttctcaact ... actgattcagTCTCTCCAACTTGATGAAAAAGATAACCATCCAAGAGCCAACCTTTGAGAG
EST: gi|116481924|gb|EG524516.1|EG524516
EST:     AAGGATAGTTTATACATCGAAAGAATCCGCATAGAGAAGCTCAAGCTCAG                         TCTCTCCAACTTGATGAAAAAGATAACCATCCAAGAGCCAACCTTTGAGAG
genomic: AAGGATAGTTTATACATCGAAAGAATCCGCATAGAGAAGCTCAAGCTCAGgttctcaact ... actgattcagTCTCTCCAACTTGATGAAAAAGATAACCATCCAAGAGCCAACCTTTGAGAG
EST: gi|116480243|gb|EG522835.1|EG522835
EST:     AAGGATAGTTTATACATCGAAAGAATCCGCATAGAGAAGCTCAAGCTCAG                         TCTCTCCAACTTGATGAAAAAGATAACCATCCAAGAGCCAACCTTTGAGAG
genomic: AAGGATAGTTTATACATCGAAAGAATCCGCATAGAGAAGCTCAAGCTCAGgttctcaact ... actgattcagTCTCTCCAACTTGATGAAAAAGATAACCATCCAAGAGCCAACCTTTGAGAG
EST: gi|116481923|gb|EG524515.1|EG524515
EST:     AAGGATAGTTTATACATCGAAAGAATCCGCATAGAGAAGCTCAAGCTCAG                         TCTCTCCAACTTGATGAAAAAGATAACCATCCAAGAGCCAACCTTTGAGAG
genomic: AAGGATAGTTTATACATCGAAAGAATCCGCATAGAGAAGCTCAAGCTCAGgttctcaact ... actgattcagTCTCTCCAACTTGATGAAAAAGATAACCATCCAAGAGCCAACCTTTGAGAG
EST: gi|116480191|gb|EG522783.1|EG522783
EST:     AAGGATAGTTTATACATCGAAAGAATCCACATAGAGAAGCTCAAGCTCAG                         TCTCTCCAACTTGATGAAAAAGATAACCATCCAAGAGCCAACCTTTGAGAG
genomic: AAGGATAGTTTATACATCGAAAGAATCCGCATAGAGAAGCTCAAGCTCAGgttctcaact ... actgattcagTCTCTCCAACTTGATGAAAAAGATAACCATCCAAGAGCCAACCTTTGAGAG
EST: gi|116481912|gb|EG524504.1|EG524504
EST:     AAGGATAGTTTATACATCGAAAGAATCCGCATAGAGAAGCTCAAGCTCAG                         TCTCTCCAACTTGATGAAAAAGATAACCATCCAAGAGCCAACCTTTGAGAG
genomic: AAGGATAGTTTATACATCGAAAGAATCCGCATAGAGAAGCTCAAGCTCAGgttctcaact ... actgattcagTCTCTCCAACTTGATGAAAAAGATAACCATCCAAGAGCCAACCTTTGAGAG
EST: gi|116481910|gb|EG524502.1|EG524502
EST:     AAGGATAGTTTATACATCGAAAGAATCCGCATAGAGAAGCTCAAGCTCAG                         TCTCTCCAACTTGATGAAAAAGATAACCATCCAAGAGCCAACCTTTGAGAG
genomic: AAGGATAGTTTATACATCGAAAGAATCCGCATAGAGAAGCTCAAGCTCAGgttctcaact ... actgattcagTCTCTCCAACTTGATGAAAAAGATAACCATCCAAGAGCCAACCTTTGAGAG
EST: gi|116481921|gb|EG524513.1|EG524513
EST:     AAGGATAGTTTATACATCGAAAGAATCCGCATAGAGAAGCTCAAGCTCAG                         TCTCTCCAACTTGATGAAAAAGATAACCATCCAAGAGCCAACCTTTGAGAG
genomic: AAGGATAGTTTATACATCGAAAGAATCCGCATAGAGAAGCTCAAGCTCAGgttctcaact ... actgattcagTCTCTCCAACTTGATGAAAAAGATAACCATCCAAGAGCCAACCTTTGAGAG
EST: gi|116480267|gb|EG522859.1|EG522859
EST:     AAGGATAGTTTATACATCGAAAGAATCCGCATAGAGAAGCTCAAGCTCAG                         TCTCTCCAACTTGATGAAAAAGATAACCATCCAAGAGCCAACCTTTGAGAG
genomic: AAGGATAGTTTATACATCGAAAGAATCCGCATAGAGAAGCTCAAGCTCAGgttctcaact ... actgattcagTCTCTCCAACTTGATGAAAAAGATAACCATCCAAGAGCCAACCTTTGAGAG
EST: gi|116481918|gb|EG524510.1|EG524510
EST:     AAGGATAGTTTATACATCGAAAGAATCCGCATAGAGAAGCTCAAGCTCAG                         TCTCTCCAACTTGATGTAAAAGATAACCATCCAAGAGCCAACCTTTGAGAG
genomic: AAGGATAGTTTATACATCGAAAGAATCCGCATAGAGAAGCTCAAGCTCAGgttctcaact ... actgattcagTCTCTCCAACTTGATGAAAAAGATAACCATCCAAGAGCCAACCTTTGAGAG
EST: gi|116481916|gb|EG524508.1|EG524508
EST:     AAGGATAGTTTATACATCGAAAGAATCCGCATAGAGAAGCTCAAGCTCAG                         TCTCTCCAACTTGATGAAAAAGATAACCATCCAAGAGCCAACCTTTGAGAG
genomic: AAGGATAGTTTATACATCGAAAGAATCCGCATAGAGAAGCTCAAGCTCAGgttctcaact ... actgattcagTCTCTCCAACTTGATGAAAAAGATAACCATCCAAGAGCCAACCTTTGAGAG
EST: gi|116480218|gb|EG522810.1|EG522810
EST:     AAGGATAGTTTATACATCGAAAGAATCCACATAGAGAAGCTCAAGCTCAG                         TCTCTCCAACTTGATGAAAAAGATAACCATCCAAGAGCCAACCTTTGAGAG
genomic: AAGGATAGTTTATACATCGAAAGAATCCGCATAGAGAAGCTCAAGCTCAGgttctcaact ... actgattcagTCTCTCCAACTTGATGAAAAAGATAACCATCCAAGAGCCAACCTTTGAGAG
EST: gi|116481922|gb|EG524514.1|EG524514
EST:     AAGGATAGTTTATACATCGAAAGAATCCGCATAGAGAAGCTCAAGCTCAG                         TCTCTCCAACTTGATGAAAAAGATAACCATCCAAGAGCCAACCTTTGAGAG
genomic: AAGGATAGTTTATACATCGAAAGAATCCGCATAGAGAAGCTCAAGCTCAGgttctcaact ... actgattcagTCTCTCCAACTTGATGAAAAAGATAACCATCCAAGAGCCAACCTTTGAGAG
EST: gi|116480168|gb|EG522760.1|EG522760
EST:     AAGGATAGTTTATACATCGAAAGAATCCGCATAGAGAAGCTCAAGCTCAG                         TCTCTCCAACTTGATGAAAAAGATAACCATCCAAGAGCCAACCTTTGAGAG
genomic: AAGGATAGTTTATACATCGAAAGAATCCGCATAGAGAAGCTCAAGCTCAGgttctcaact ... actgattcagTCTCTCCAACTTGATGAAAAAGATAACCATCCAAGAGCCAACCTTTGAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagctgttacaattatatcattgacttgtctctttgtttctgatcactgattcagTCTCTCCAACTTGATGAAAAAGATAACCATCCAAGAGCCAACCTTTGAGAGAATCATTGTAGTATACAG
                                            cactgat  putative branch site (score: 3)
      ttacaattatatcatt  TA-rich tract