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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatactcataaatatacaattgtagataaacatacataaaccaaacatcattagaaaatcagatatttaactggtgaatgttttgttgtgatatatgcgaacagCACCAGACATTGAAGCAAAAGTTTGTGGGGAACTTGACAGCAACAGTGGATTCTCATGCGTGTAAGTTGTATGTTCTCAAACCTGTTGCCTGAAAATACA

Basic information

species Arabidopsis thaliana
transcript AT5G08380.1
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86080378|gb|DR376135.1|DR376135
EST:     ATATTGAGATCCCTGCAAATAGCATCGTTGAAGCCAGAGATCTATGGGAG                         CACCAGACATTGAAGCAAAAGTTTGTGGGGAACTTGACAGCAACAGTGGAT
genomic: ATATTGAGATCCCTGCAAATAGCATCGTTGAAGCCAGAGATCTATGGGAGgtatactcat ... atgcgaacagCACCAGACATTGAAGCAAAAGTTTGTGGGGAACTTGACAGCAACAGTGGAT
EST: gi|86075946|gb|DR371703.1|DR371703
EST:     ATATTGAGATCCCTGCAAATAGCATCGTTGAAGCCAGAGATCTATGGGAG                         CACCAGACATTGAAGCAAAAGTTTGTGGGGAACTTGACAGCAACAGTGGAT
genomic: ATATTGAGATCCCTGCAAATAGCATCGTTGAAGCCAGAGATCTATGGGAGgtatactcat ... atgcgaacagCACCAGACATTGAAGCAAAAGTTTGTGGGGAACTTGACAGCAACAGTGGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attagaaaatcagatatttaactggtgaatgttttgttgtgatatatgcgaacagCACCAGACATTGAAGCAAAAGTTTGTGGGGAACTTGACAGCAACAGTGGATTCTCATGCGTGTAAGTTGTATGTTCTCAAACCTGTTGCCTGAAAATACA
               atttaac  putative branch site (score: 3)
     aaaatcagatatttaa  TA-rich tract