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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgttaagattttctatctcttttttgaattcttcttgaatagacttcatgtttatgtatgtgtttcattaccagTGAGCCATGGAAGCGTCCATCATTTGCAACTATAATGGACTTGCTAAGACCATTGATCAAATCAGCGGTTCCTCCGCCCAACCGCTCGGATTTGTAAAAT

Basic information

species Arabidopsis thaliana
transcript AT5G03730.2
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116414933|gb|EG457525.1|EG457525
EST:     CGTAATCTGAATCCTCAGGTTGCAGCCATAATCGAGGGTTGTTGGACCAA                         TGAGCCATGGAAGCGTCCATCATTTGCAACTATAATGGACTTGCTAAGACC
genomic: CGTAATCTGAATCCTCAGGTTGCAGCCATAATCGAGGGTTGTTGGACCAAgtacgttaag ... tcattaccagTGAGCCATGGAAGCGTCCATCATTTGCAACTATAATGGACTTGCTAAGACC
EST: gi|116423837|gb|EG466429.1|EG466429
EST:     CGTAATCTGAATCCTCAGGTTGCAGCCATAATCGAGGGTTGTTGGACCAA                         TGAGCCATGGAAGCGTCCATCATTTGCAACTATAATGGACTTGCTAAGACC
genomic: CGTAATCTGAATCCTCAGGTTGCAGCCATAATCGAGGGTTGTTGGACCAAgtacgttaag ... tcattaccagTGAGCCATGGAAGCGTCCATCATTTGCAACTATAATGGACTTGCTAAGACC
EST: gi|116414934|gb|EG457526.1|EG457526
EST:     CGTAATCTGAATCCTCAGGTTGCAGCCATAATCGAGGGTTGTTGGACCAA                         TGAGCCATGGAAGCGTCCATCATTTGCAACTATAATGGACTTGCTAAGACC
genomic: CGTAATCTGAATCCTCAGGTTGCAGCCATAATCGAGGGTTGTTGGACCAAgtacgttaag ... tcattaccagTGAGCCATGGAAGCGTCCATCATTTGCAACTATAATGGACTTGCTAAGACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttttgaattcttcttgaatagacttcatgtttatgtatgtgtttcattaccagTGAGCCATGGAAGCGTCCATCATTTGCAACTATAATGGACTTGCTAAGACCATTGATCAAATCAGCGGTTCCTCCGCCCAACCGCTCGGATTTGTAAAAT
                                           tttcatt  CT-rich tract
                               tttatgtat  TA-rich tract