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gttagtatctctacgtagccgttgctcttacgacgagatctagaaaagcatgccatatgctttggttcactcatccctttccttgccattttcagCTTGTGCTTCTCTTTCTGGCTCTTGTTTCTGTTCCGTGTATGTTGCTTCCAAAGCCGTTCATCTTGAAGAAACAACATGAAGCT
species | Arabidopsis thaliana |
transcript | AT4G39080.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: AAAACATTACAG CTTGTGCTTCTCTTTCTTGGCTCTTGTTTCTGTTCCGTGTATGTTGCTTCCEST: gi|116415768|gb|EG458360.1|EG458360
genomic: AAAACATTACAGgttagtatct ... ccattttcagCTTGTGCTTCTCTTTC-TGGCTCTTGTTTCTGTTCCGTGTATGTTGCTTCC
EST: TGGACGAGTTAGGAGAGAATCAACTGTTCCCTCACCAGAAAACATTACAG CTTGTGCTTCTCTTTCTGGCTCTTGTTTCTGTTCCGTGTATGTTGCTTCCAEST: gi|164164977|gb|ES024332.1|ES024332
genomic: TGGACGAGTTAGGAGAGAATCAACTGTTCCCTCACCAGAAAACATTACAGgttagtatct ... ccattttcagCTTGTGCTTCTCTTTCTGGCTCTTGTTTCTGTTCCGTGTATGTTGCTTCCA
EST: TGGACGAGTTAGGAGAGAATCAACTGTTCCCTCACCAGAAAACATTACAG CTTGTGCTTCTCTTTCTGGCTCTTGTTTCT
genomic: TGGACGAGTTAGGAGAGAATCAACTGTTCCCTCACCAGAAAACATTACAGgttagtatct ... ccattttcagCTTGTGCTTCTCTTTCTGGCTCTTGTTTCT
tagaaaagcatgccatatgctttggttcactcatccctttccttgccattttcagCTTGTGCTTCTCTTTCTGGCTCTTGTTTCTGTTCCGTGTATGTTGCTTCCAAAGCCGTTCATCTTGAAGAAACAACATGAAGCT
ttcactcatccctttc CT-rich tract
attttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtatctctacgtagccgttgctcttacgacgagatctagaaaagcatgccatatgctttggttcactcatccctttccttgccattttcagCTTGTGCTTCTCTTTCTGGCTCTTGTTTCTGTTCCGTGTATGTTGCTTCCAAAGCCGTTCATCTTGAAGAAACAACATGAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC