1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtaagactttatttcttgtccattaccagcattgcagaaaagctttgtttatgtaagttttacttgtcaacttttttagcctgagcttaacttgttattatgtttttgtgatttcagTTGTATGCCAATTACGCTATTGGAAAGGACGTGCAGGCCATGAAAGCCGTGGTTGGAGAAGAAGCTCTTTCTTCCGAGGATCTG
species | Arabidopsis thaliana |
transcript | AT4G38510.5 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: CTCGCAGGGACCACTCTGATGTTTCTAATCAA TTGTATGCCAATTACGCTATTGGAAAGGACGTGCAGGCCATGAAAGCCGTEST: gi|125318034|gb|EL332119.1|EL332119
genomic: CTCGCAGGGACCACTCTGATGTTTCTAATCAAgtaagacttt ... gtgatttcagTTGTATGCCAATTACGCTATTGGAAAGGACGTGCAGGCCATGAAAGCCGT
EST: TGTTTCTAATCAA TTGTATGCCAATTACGCTATTGGAAAGGACGTGCAGGCCATGAAAGCCGTGEST: gi|164031420|gb|EL996362.1|EL996362
genomic: TGTTTCTAATCAAgtaagacttt ... gtgatttcagTTGTATGCCAATTACGCTATTGGAAAGGACGTGCAGGCCATGAAAGCCGTG
EST: CCATTGGTGAGGGTATGACTCGCAGGGACCACTCTGATGTTTCTAATCAA TTGTATGCCAATTACGCTATTEST: gi|124772760|gb|EH862889.1|EH862889
genomic: CCATTGGTGAGGGTATGACTCGCAGGGACCACTCTGATGTTTCTAATCAAgtaagacttt ... gtgatttcagTTGTATGCCAATTACGCTATT
EST: TTGGTGAGGGTATGACTCGCAGGGACCACTCTGATGTTTCTAATCAA TTGTATGCCAATTACGCTATTGGAAAGGACGTGCAGGCCATGAAAGCCGTGEST: gi|125166086|gb|EL192050.1|EL192050
genomic: TTGGTGAGGGTATGACTCGCAGGGACCACTCTGATGTTTCTAATCAAgtaagacttt ... gtgatttcagTTGTATGCCAATTACGCTATTGGAAAGGACGTGCAGGCCATGAAAGCCGTG
EST: ACCACTCTGATGTTTCTAATCAA TTGTATGCCAATTACGCTATTGGAAAGGACGTGCAGGCCATGAAAGCCGT
genomic: ACCACTCTGATGTTTCTAATCAAgtaagacttt ... gtgatttcagTTGTATGCCAATTACGCTATTGGAAAGGACGTGCAGGCCATGAAAGCCGT
cttgtcaacttttttagcctgagcttaacttgttattatgtttttgtgatttcagTTGTATGCCAATTACGCTATTGGAAAGGACGTGCAGGCCATGAAAGCCGTGGTTGGAGAAGAAGCTCTTTCTTCCGAGGATCTG
gcttaac putative branch site (score: 3)
tttttgt putative PPT
ttaacttgttattatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagactttatttcttgtccattaccagcattgcagaaaagctttgtttatgtaagttttacttgtcaacttttttagcctgagcttaacttgttattatgtttttgtgatttcagTTGTATGCCAATTACGCTATTGGAAAGGACGTGCAGGCCATGAAAGCCGTGGTTGGAGAAGAAGCTCTTTCTTCCGAGGATCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT