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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtcctatagtttcccgacacatggatgtagacagtcaataccacataatatatttttgcatttcatacttatccataaccttgttatattaatttggcagGGGTCTAGTTTGGGACAGTTTTTCAGTCAGTATCTGGAACCTATAAAGCTAAACGATGTGACG

Basic information

species Arabidopsis thaliana
transcript AT4G38240.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G38240.2 (Arabidopsis thaliana), 3'ss of exon 14
lower sequence: EFJ19102 (Selaginella moellendorffii), 3'ss of exon 12
gtcctatagtttcccgacacatggatgtagacagtcaataccacataatatatttttgcatttcatacttatccataaccttgttatattaatttggcagGGGTCTAGTTTGGGACAGTTTTTCAGTCAGTATCTGGAACCTATAAAGCTAAACGATGTGACG
                                                ||  || ||   |||||| |||   | | | |    ||  || ||   |||||| || ||||| |||||||||||||| ||||| || ||| | |||||||| ||||||||   |
-----------------------------------------------gtaagttcttttgtttcattctt---cgtgaaccaaatactttcat---gcagGGATCCAGTTTCGGACAGTTTTTCAGGCAGTACCTAGAAACGATAAAGCTCAACGATGTTCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatatatttttgcatttcatacttatccataaccttgttatattaatttggcagGGGTCTAGTTTGGGACAGTTTTTCAGTCAGTATCTGGAACCTATAAAGCTAAACGATGTGACG
                                         tattaat  putative branch site (score: 2)
                             ataaccttgttatatt  TA-rich tract