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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatcttcatatctttctacaattccacttccattctctaattattctctcacgtgatatacacacactcaatcactgatgtactcgtatggatgcagCGTGGAACTGATGCATTGCCGGGGATGTCACTTCTATCGGGCTTACTAGAAACT

Basic information

species Arabidopsis thaliana
transcript AT4G36440.1
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86085527|gb|DR381286.1|DR381286
EST:     CAAGAGTAGAGCGTGTG                         CGTGGAACTGATGCATTGCCGGGGATGTCACTTCTATCGGGCTTACTAGAA
genomic: CAAGAGTAGAGCGTGTGgtaatcttca ... atggatgcagCGTGGAACTGATGCATTGCCGGGGATGTCACTTCTATCGGGCTTACTAGAA
EST: gi|124799463|gb|EH889142.1|EH889142
EST:     CACTTTTCTGCTGT-GGGGCTTTATTTATAAAACAAGAGTAGAGCGTGTG                         CGTGGAACTGATGCATTGCCGGGGATGTCACTTCTATCGGG
genomic: CACTTTTCTGCTGTGGGGGCTTTATTTATAAAACAAGAGTAGAGCGTGTGgtaatcttca ... atggatgcagCGTGGAACTGATGCATTGCCGGGGATGTCACTTCTATCGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attctctcacgtgatatacacacactcaatcactgatgtactcgtatggatgcagCGTGGAACTGATGCATTGCCGGGGATGTCACTTCTATCGGGCTTACTAGAAACT
                              cactgat  putative branch site (score: 3)
           tgatata  TA-rich tract