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gtaagttacatctttaccgggagagtttagcttttacttagcaggatcatatacattaactcaaaaaacatatatacatggtgtgtatagGCATGGCTGCTGTATTTCTGGAAAAGAGCTAAAATTCATGGCGTGGAAAGTGATATTGCGGAAGAGCGTCTTCAGTTCTGGATCAACCGACTCGGGCAAC
species | Arabidopsis thaliana |
transcript | AT4G25070.2 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: AGTTGAGTCATGATGAGCAACAAGATATTCTCTTTAAAGAG GCATGGCTGCTGTATTTCTGGAAAAGAGCTAAAATTCATGGCGTGGAAAGTEST: gi|116426415|gb|EG469007.1|EG469007
genomic: AGTTGAGTCATGATGAGCAACAAGATATTCTCTTTAAAGAGgtaagttaca ... gtgtgtatagGCATGGCTGCTGTATTTCTGGAAAAGAGCTAAAATTCATGGCGTGGAAAGT
EST: AGTTGAGTCATGATGAGCAACAAGATATTCTCTTTAAAGAG GCATGGCTGCTGTATTTCTGGAAAAGAGCTAAAATTCATGGCGTGGAAAGTEST: gi|116426421|gb|EG469013.1|EG469013
genomic: AGTTGAGTCATGATGAGCAACAAGATATTCTCTTTAAAGAGgtaagttaca ... gtgtgtatagGCATGGCTGCTGTATTTCTGGAAAAGAGCTAAAATTCATGGCGTGGAAAGT
EST: AGTTGAGTCATGATGAGCAACAAGATATTCTCTTTAAAGAG GCATGGCTGCTGTATTTCTGGAAAAGAGCTAAAATTCATGGCGTGGAAAGTEST: gi|116426413|gb|EG469005.1|EG469005
genomic: AGTTGAGTCATGATGAGCAACAAGATATTCTCTTTAAAGAGgtaagttaca ... gtgtgtatagGCATGGCTGCTGTATTTCTGGAAAAGAGCTAAAATTCATGGCGTGGAAAGT
EST: AGTTGAGTCATGATGAGCAACAAGATATTCTCTTTAAAGAG GCATGGCTGCTGTATTTCTGGAAAAGAGCTAAAATTCATGGCGTGGAAAGTEST: gi|116426408|gb|EG469000.1|EG469000
genomic: AGTTGAGTCATGATGAGCAACAAGATATTCTCTTTAAAGAGgtaagttaca ... gtgtgtatagGCATGGCTGCTGTATTTCTGGAAAAGAGCTAAAATTCATGGCGTGGAAAGT
EST: AGTTGAGTCATGACGAGCAACAAGATATTCTCTTTAAAGAG GCATGGCTGCTGTATTTCTGGEST: gi|116426418|gb|EG469010.1|EG469010
genomic: AGTTGAGTCATGATGAGCAACAAGATATTCTCTTTAAAGAGgtaagttaca ... gtgtgtatagGCATGGCTGCTGTATTTCTGG
EST: AGTTGAGTCATGATGAGCAACAAGATATTCTCTTTAAAGAG GCATGGCTGCTGTATTTCTGGAAAAGAGCTAAAATTCATGGCGTGGAAAGT
genomic: AGTTGAGTCATGATGAGCAACAAGATATTCTCTTTAAAGAGgtaagttaca ... gtgtgtatagGCATGGCTGCTGTATTTCTGGAAAAGAGCTAAAATTCATGGCGTGGAAAGT
acttagcaggatcatatacattaactcaaaaaacatatatacatggtgtgtatagGCATGGCTGCTGTATTTCTGGAAAAGAGCTAAAATTCATGGCGTGGAAAGTGATATTGCGGAAGAGCGTCTTCAGTTCTGGATCAACCGACTCGGGCAAC
cattaac putative branch site (score: 2)
atatacattaactcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttacatctttaccgggagagtttagcttttacttagcaggatcatatacattaactcaaaaaacatatatacatggtgtgtatagGCATGGCTGCTGTATTTCTGGAAAAGAGCTAAAATTCATGGCGTGGAAAGTGATATTGCGGAAGAGCGTCTTCAGTTCTGGATCAACCGACTCGGGCAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA