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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctgcagtttctttcactctcagttttttttctctttgtgcaatcgagatactataccgctttcctttgtccaaccgaaagtttaatggttgttatagGAAAATCGAGATTCTACCGTTTGGGAAAGAAGTGTTGTTTACTGCAGGAATGGTACTCAAGGCAAAAGCTTAAAGCATCTAGGAATCAAGATTTTAACAA

Basic information

species Arabidopsis thaliana
transcript AT4G18470.1
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86075896|gb|DR371653.1|DR371653
EST:     ATATGCAGTAGTATCATCTCTGCATTTACTAGTCTAAAGCGAGTAGATCA                         GAAAATCGAGATTCTACCGTTTGGGAAAGAAGTGTTGTTTACTGCAGGAAT
genomic: ATATGCAGTAGTATCATCTCTGCATTTACTAGTCTAAAGCGAGTAGATCAgtaagctgca ... gttgttatagGAAAATCGAGATTCTACCGTTTGGGAAAGAAGTGTTGTTTACTGCAGGAAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgagatactataccgctttcctttgtccaaccgaaagtttaatggttgttatagGAAAATCGAGATTCTACCGTTTGGGAAAGAAGTGTTGTTTACTGCAGGAATGGTACTCAAGGCAAAAGCTTAAAGCATCTAGGAATCAAGATTTTAACAA
                                     gtttaat  putative branch site (score: 4)
                                  aaagtttaat  TA-rich tract