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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttcattaattacaatggaattcaaacggttttgattaatgttgatgttgataattaagtgatcattttcatcaacatgcagGTTACTAATCCATTTCAAATTCCAGAGACTCAACCTAAAGGTTTCTTTGATTCGATCAGGATACTATGGACGAAAATCATCAATGGTTTAGTCGATTTCA

Basic information

species Arabidopsis thaliana
transcript AT4G11720.1
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116455584|gb|EG498176.1|EG498176
EST:     CCGAGTGTCAATTTAGTACAACGGCTACCGTACTTGACAATGGAACTCAG                         GTTACTAATCCATTTCAAATTCCAGAGACTCAACCTAAAGGTTTCTTTGAT
genomic: CCGAGTGTCAATTTAGTACAACGGCTACCGTACTTGACAATGGAACTCAGgtttcattaa ... caacatgcagGTTACTAATCCATTTCAAATTCCAGAGACTCAACCTAAAGGTTTCTTTGAT
EST: gi|116455581|gb|EG498173.1|EG498173
EST:     CCGAGTGTCAATTTAGTACAACGGCTACCGTACTTGACAATGGAACTCAG                         GTTACTAATCCATTTCAAATTCCAGAGACTCAACCTAAAGGTTTCTTTGAT
genomic: CCGAGTGTCAATTTAGTACAACGGCTACCGTACTTGACAATGGAACTCAGgtttcattaa ... caacatgcagGTTACTAATCCATTTCAAATTCCAGAGACTCAACCTAAAGGTTTCTTTGAT
EST: gi|116455583|gb|EG498175.1|EG498175
EST:     CCGAGTGTCAATTTAGTACAACGGCTACCGTACTTGACAATGGAACTCAG                         GTTACTAATCCATTTCAAATTCCAGAGACTCAACCTAAAGGTTTCTTTGAT
genomic: CCGAGTGTCAATTTAGTACAACGGCTACCGTACTTGACAATGGAACTCAGgtttcattaa ... caacatgcagGTTACTAATCCATTTCAAATTCCAGAGACTCAACCTAAAGGTTTCTTTGAT
EST: gi|116455580|gb|EG498172.1|EG498172
EST:     CCGAGTGTCAATTTAGTACAACGGCTACCGTACTTGACAATGGAACTCAG                         GTTACTAATCCATTTCAAATTCCAGAGACTCAACCTAAAGGTTTCTTTGAT
genomic: CCGAGTGTCAATTTAGTACAACGGCTACCGTACTTGACAATGGAACTCAGgtttcattaa ... caacatgcagGTTACTAATCCATTTCAAATTCCAGAGACTCAACCTAAAGGTTTCTTTGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggttttgattaatgttgatgttgataattaagtgatcattttcatcaacatgcagGTTACTAATCCATTTCAAATTCCAGAGACTCAACCTAAAGGTTTCTTTGATTCGATCAGGATACTATGGACGAAAATCATCAATGGTTTAGTCGATTTCA
                                      ttttcatc  CT-rich tract
                 atgttgataattaa  TA-rich tract