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gtttgtatttcattctcgatttgatttagtagttttgtacctagctgctatctttatatttttcatggaagaggaatctaactttggagtgtctagacatacaacacgctttagaataaacatttgtagagtgactctttaatgtgcttgttagGTTCTTTTGGCGACTGGAGGTGGGCATTTGGTTTATCTAGAAATTGGAGATGGGAAATTGACGGAAGTGCAACATGCCCTTTTGGAGTACGAGGTTTCCT
species | Arabidopsis thaliana |
transcript | AT4G05420.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: ATGCCCCAGCTGGATTCACTGTTAATGTTGCAACTGCAAATGCCAGCCAG GTTCTTTTGGCGAEST: gi|116483005|gb|EG525597.1|EG525597
genomic: ATGCCCCAGCTGGATTCACTGTTAATGTTGCAACTGCAAATGCCAGCCAGgtttgtattt ... tgcttgttagGTTCTTTTGGCGA
EST: ATGCCCCAGCTGGATTCACTGTTAATGTTGCAACTGCAAATGCCAGCCAG GTTCTTTTGGCGACTGGAGGTGGGCATTTGGTTTATCTAGAAATTGGAGATEST: gi|116382317|gb|EG424909.1|EG424909
genomic: ATGCCCCAGCTGGATTCACTGTTAATGTTGCAACTGCAAATGCCAGCCAGgtttgtattt ... tgcttgttagGTTCTTTTGGCGACTGGAGGTGGGCATTTGGTTTATCTAGAAATTGGAGAT
EST: ATGCCCCAGCTGGATTCACTGTTAATGTTGCAACTGCAAATGCCAGCCAG GTTCTTTTGGCGACTGGAGGTGGGCATTTGGTTTATCTAGAAATTGGAGATEST: gi|116382314|gb|EG424906.1|EG424906
genomic: ATGCCCCAGCTGGATTCACTGTTAATGTTGCAACTGCAAATGCCAGCCAGgtttgtattt ... tgcttgttagGTTCTTTTGGCGACTGGAGGTGGGCATTTGGTTTATCTAGAAATTGGAGAT
EST: ATGCCCCAGCTGGATTCACTGTTAATGTTGCAACTGCAAATGCCAGCCAG GTTCTTTTGGCGACTGGAGGTGGGCATTTGGTTTATCTAGAAATTGGAGATEST: gi|116382319|gb|EG424911.1|EG424911
genomic: ATGCCCCAGCTGGATTCACTGTTAATGTTGCAACTGCAAATGCCAGCCAGgtttgtattt ... tgcttgttagGTTCTTTTGGCGACTGGAGGTGGGCATTTGGTTTATCTAGAAATTGGAGAT
EST: ATGCCCCAGCTGGATTCACTGTTAATGTTGCAACTGCAAATGCCAGCCAG GTTCTTTTGGCGACTGGAGGTGGGCATTTGGTTTATCTAGAAATTGGAGATEST: gi|116456286|gb|EG498878.1|EG498878
genomic: ATGCCCCAGCTGGATTCACTGTTAATGTTGCAACTGCAAATGCCAGCCAGgtttgtattt ... tgcttgttagGTTCTTTTGGCGACTGGAGGTGGGCATTTGGTTTATCTAGAAATTGGAGAT
EST: ATGCCCCAGCTGGATTCACTGTTAATGTTGCAACTGCAAATGCCAGCCAG GTTCTTTTGGCGACTGGAGGTGGGCATTTGGTTTATCTAGAAATTGGAGATEST: gi|116455522|gb|EG498114.1|EG498114
genomic: ATGCCCCAGCTGGATTCACTGTTAATGTTGCAACTGCAAATGCCAGCCAGgtttgtattt ... tgcttgttagGTTCTTTTGGCGACTGGAGGTGGGCATTTGGTTTATCTAGAAATTGGAGAT
EST: ATGCCCCAGCTGGATTCACTGTTAATGTTGCAACTGCAAATGCCAGCCAG GTTCTTTTGGCGACTGGAGGTGGGCATTTGGTTTATCTAGAAATTGGAGAT
genomic: ATGCCCCAGCTGGATTCACTGTTAATGTTGCAACTGCAAATGCCAGCCAGgtttgtattt ... tgcttgttagGTTCTTTTGGCGACTGGAGGTGGGCATTTGGTTTATCTAGAAATTGGAGAT
tacaacacgctttagaataaacatttgtagagtgactctttaatgtgcttgttagGTTCTTTTGGCGACTGGAGGTGGGCATTTGGTTTATCTAGAAATTGGAGATGGGAAATTGACGGAAGTGCAACATGCCCTTTTGGAGTACGAGGTTTCCT
ctttaat putative branch site (score: 4)
tttagaataaacattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtatttcattctcgatttgatttagtagttttgtacctagctgctatctttatatttttcatggaagaggaatctaactttggagtgtctagacatacaacacgctttagaataaacatttgtagagtgactctttaatgtgcttgttagGTTCTTTTGGCGACTGGAGGTGGGCATTTGGTTTATCTAGAAATTGGAGATGGGAAATTGACGGAAGTGCAACATGCCCTTTTGGAGTACGAGGTTTCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG