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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttatggtgggattcattgatggtctttgtatctaatttgctataatctaagaataatcacattttcttgtcccactcgcagAGAATGGTAAAGTAGGACATGTGAATCAGGCTAACAACATGTATTTATTCCCGGG

Basic information

species Arabidopsis thaliana
transcript AT4G00570.1
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125062361|gb|EL130734.1|EL130734
EST:     AACGTTGAACTTG                         AGAATGGTAAAGTAGGACATGTGAATCAGGCTAACAACATGTATTTATTCC
genomic: AACGTTGAACTTGgtatgttatg ... ccactcgcagAGAATGGTAAAGTAGGACATGTGAATCAGGCTAACAACATGTATTTATTCC
EST: gi|124759082|gb|EH849212.1|EH849212
EST:     CATTTGAGAACGTTGAACTTG                         AGAATGGTAAAGTAGGACATGTGAATCAGGCTAACAACATGTATTTATTCC
genomic: CATTTGAGAACGTTGAACTTGgtatgttatg ... ccactcgcagAGAATGGTAAAGTAGGACATGTGAATCAGGCTAACAACATGTATTTATTCC
EST: gi|116463393|gb|EG505985.1|EG505985
EST:     AGGAAACATTGTCTTTGCAAGTGGAAGTCCATTTGAGAACGTTGAACTTG                         AGAATGGTAAAGTAGGACATGTGAATCAGGCTAACAACATGTATTTATTCC
genomic: AGGAAACATTGTCTTTGCAAGTGGAAGTCCATTTGAGAACGTTGAACTTGgtatgttatg ... ccactcgcagAGAATGGTAAAGTAGGACATGTGAATCAGGCTAACAACATGTATTTATTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtatctaatttgctataatctaagaataatcacattttcttgtcccactcgcagAGAATGGTAAAGTAGGACATGTGAATCAGGCTAACAACATGTATTTATTCCCGGG
   atctaat  putative branch site (score: 3)
                                   ttttcttgtcccactc  putative PPT
              tataatctaagaataa  TA-rich tract