1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' |
gtatttcttttgattgttaatacagaatgcttgttgctgcaagaaaatgtattggtaattgatatagttacactaacatttagGGCGGTTTGAGCTCTGGTTACAAAAATAGTATGACAGAGAAAGGTTCGTCAGGCGAAACCTACACGCCGGAATCAATTGCACTTATTCAAGTATCTGGAA
species | Arabidopsis thaliana |
transcript | AT3G57410.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: AAGAGCCTCCACAATTTGTTGCACTTTTTCAACATATGGTTGTCCTTAAG GGCGGTTTGAGCTCTGGTTACAAAA-TAGTATGACAGAGAEST: gi|86063709|gb|DR359466.1|DR359466
genomic: AAGAGCCTCCACAATTTGTTGCACTTTTTCAACATATGGTTGTCCTTAAGgtatttcttt ... taacatttagGGCGGTTTGAGCTCTGGTTACAAAAATAGTATGACAGAGA
EST: AAGAGCCTCCACAATTTGTTGCACTTTTTCAACATATGGTTGTCCTTAAG GGCGGTTTGAGCTCTGGTTACAAAAATAGTATGACAGAGAAAGGTTCGTCAEST: gi|124746906|gb|EH837202.1|EH837202
genomic: AAGAGCCTCCACAATTTGTTGCACTTTTTCAACATATGGTTGTCCTTAAGgtatttcttt ... taacatttagGGCGGTTTGAGCTCTGGTTACAAAAATAGTATGACAGAGAAAGGTTCGTCA
EST: GCACTTTTTTCAACATATGGTTGTCCTTAAG GGCGGTTTGAGCTCTAGTTACAAAAATAGTATGACAGAGAAAGGTTCGTCA
genomic: GCAC-TTTTTCAACATATGGTTGTCCTTAAGgtatttcttt ... taacatttagGGCGGTTTGAGCTCTGGTTACAAAAATAGTATGACAGAGAAAGGTTCGTCA
gcttgttgctgcaagaaaatgtattggtaattgatatagttacactaacatttagGGCGGTTTGAGCTCTGGTTACAAAAATAGTATGACAGAGAAAGGTTCGTCAGGCGAAACCTACACGCCGGAATCAATTGCACTTATTCAAGTATCTGGAA
cactaac putative branch site (score: 1)
taattgatatagtta TA-rich tract