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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagataagtttctgttcaatttgcttgttttgtttctcagaaatggttttcactcatatccttgatcacataccattacatatgttttggcagCTGTCTTGGGGCGTCTTCCAGGGACCACTGTGTACAGAAACATGAAACAGTATCCAGAGGCATACACTTACAACGGGATTGTGATTGTTCGAATCGATGC

Basic information

species Arabidopsis thaliana
transcript AT3G12520.2
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G12520.2 (Arabidopsis thaliana), 3'ss of exon 14
lower sequence: Vv13s0019g00010.t01 (Vitis vinifera), 3'ss of exon 13
gtgagataagtttctgttcaatttgcttgttt--tgtttctcagaaatggttttca----ctcatatccttgatcacataccattacatatgttttggcagCTGTCTTGGGGCGTCTTCCAGGGACCACTGTGTACAGAAACATGAAACAGTATCCAGAGGCATACACTTACAACGGGATTGTGATTGTTCGAATCGATGC
 ||   |   ||| |||   | |   | | ||  ||||||       |||  ||      ||| |  |  ||||       || |   |   ||    ||||| ||||||||||||||||||| |||||||| || ||||||||  | || |||||||| ||||| || ||| | ||||||||||||||||| || |||||
-tggagtttctttatgtaataatatatggcttactgtttcattattttggcatttgatttctcctcactctgattgttctgcaatctgttcattactccagCTTTCTTGGGGCGTCTTCCAGGCACCACTGTTTATAGAAACATTCAGCAATATCCAGAAGCATATACATACCATGGGATTGTGATTGTTCGGATTGATGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agaaatggttttcactcatatccttgatcacataccattacatatgttttggcagCTGTCTTGGGGCGTCTTCCAGGGACCACTGTGTACAGAAACATGAAACAGTATCCAGAGGCATACACTTACAACGGGATTGTGATTGTTCGAATCGATGC
                     ccttgat  putative branch site (score: 5)
                                    attacatatgtttt  TA-rich tract