Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   
4  
 5'  3'   
5  
 5'  3'   
6  
 5'  3'   
7  
 5'  3'   
8  
 5'  3'   
9  
 5'  3'   
10  
 5'  3'   
11  
 5'  3'   
12  
 5'  3'   
13  
 5'  3'   
14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgaactaactggttatttagtaataatcgacaggtaacttttccctcacgattgcaatttaaaacctggttttttaatatcacagCTCCTTTAACAGAAGAGAAGAAATAAGGAGTCTACACAAGTTTTCTGACTAAGCTTAGTCAATTCGCTATTATGCACTCTGTTCTCAAGTTACTTGTAAT

Basic information

species Arabidopsis thaliana
transcript AT3G11710.1
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86083865|gb|DR379624.1|DR379624
EST:     TTTCTTCCCGGCAATGAGGCCACCACAGGAGGAGTCAGCAGCCGCTCAAG                         CTCCTTTAACAGAAGAGAAGAAATAAGGAGTCTACACAAGTTTTCTGACTA
genomic: TTTCTTCCCGGCAATGAGGCCACCACAGGAGGAGTCAGCAGCCGCTCAAGgtacgaacta ... aatatcacagCTCCTTTAACAGAAGAGAAGAAATAAGGAGTCTACACAAGTTTTCTGACTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caggtaacttttccctcacgattgcaatttaaaacctggttttttaatatcacagCTCCTTTAACAGAAGAGAAGAAATAAGGAGTCTACACAAGTTTTCTGACTAAGCTTAGTCAATTCGCTATTATGCACTCTGTTCTCAAGTTACTTGTAAT
                                         ttttaat  putative branch site (score: 3)
 tttttta  CT-rich tract
 ttttttaatatcaca  TA-rich tract