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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttccctttgaatttctcttcccaggctttgatctcaactaaaaacatcaaataagttaaacatcttatgactttttgcagTGACATTGTTGAAATGGCAAGTTATGCTCCACTCTTTGTGAACACAAATGATAGACG

Basic information

species Arabidopsis thaliana
transcript AT3G10740.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G10740.1 (Arabidopsis thaliana), 3'ss of exon 14
lower sequence: LOC_Os11g03730.3 (Oryza sativa), 3'ss of exon 14
----------------------------------------------gttccctttgaatttctcttc---ccaggcttt-----gatct-caactaaaaacatcaaataagtta----aacatcttat-gactttttgcagTGACATTGTTGAAATGGCAAGTTATGCTCCACTCTTTGTGAACACAAATGAT-AGACG
                                               |  | |||||  ||  ||        ||||||     ||||| | |  |||  || |||   | | |    ||| |||| | |  | ||||||||||  ||||| | |||||||||||||| |||||||| |||||||  |||||| | || 
gtgatctttccttgaaacaatcttttctttctgggtcttgtgacagatcacatttgagctttcctctgggtagggctttattaagatctactaacaaatgcaacaagatattcattgtaacttcttgttggttctttgcagTGATGTTGTTCAGATGGCAAGTTATGCACCACTCTTCGTGAACAACAATGATCAAAC-

upper sequence: AT3G10740.1 (Arabidopsis thaliana), 3'ss of exon 14
lower sequence: GRMZM2G006130_T03 (Zea mays), 3'ss of exon 14
--------------------------gttccctttga-----atttctcttcccaggctttgatctcaacta----aaaacatcaaataagttaaacatcttatgac-tttttgcagTGACATTGTTGAAATGGCAAGTTATGCTCCACTCTTTGTGAACACAAATGAT-AGACG
                          | | | | |||     ||||   ||  | ||||| |   || ||||     ||  ||    |    |     |   ||||| |||||||||||| || ||| | ||||||||||| ||||||||||| ||||||   |||||  | || 
gtgatctctccttttggttgcaagttggttcatctgatccttattttcgttggcgggcttggggttctactactaccaaggatagtctttactgtgagttagatgacctttttgcagTGATATCGTTCAGATGGCAAGTTACGCTCCACTCTTCGTGAACGACAATGACCAAAC-

upper sequence: AT3G10740.1 (Arabidopsis thaliana), 3'ss of exon 14
lower sequence: GRMZM2G006130_T05 (Zea mays), 3'ss of exon 13
-------------------------------gttccctttgaatttctcttcccaggctttgatctcaacta----aaaacatcaaataagttaaacatcttatgac-tttttgcagTGACATTGTTGAAATGGCAAGTTATGCTCCACTCTTTGTGAACACAAATGAT-AGACG
                                |    |    ||||   ||  | ||||| |   || ||||     ||  ||    |    |     |   ||||| |||||||||||| || ||| | ||||||||||| ||||||||||| ||||||   |||||  | || 
gtgatctctccttttggttgcaagttggttgatctgatccttattttcgttggcgggcttggggttctactactaccaaggatagtctttactgtgagttagatgacctttttgcagTGATATCGTTCAGATGGCAAGTTACGCTCCACTCTTCGTGAACGACAATGACCAAAC-

upper sequence: AT3G10740.1 (Arabidopsis thaliana), 3'ss of exon 14
lower sequence: GLYMA19G30150.1 (Glycine max), 3'ss of exon 14
----------------gttccctttgaatttctcttcccaggct--ttgatctcaactaaaaacatca--aataagttaaacatcttatgacttt--ttgcagTGACATTGTTGAAATGGCAAGTTATGCTCCACTCTTTGTGAACACAAATGATAGACG
                 || ||  | |||||   |   |   ||  ||| | ||   |  ||   |||  |||   |||  | | |  |   |||  || ||||||  | ||| | ||||  |||||||| ||||||||||| |||||||||||||||  
gttggattaactgcaattttccaataaattttattctacgaactagttggtgtccctttgaattgtcacaaattgcttatccttttatttgtttttcttacagTGATGTCGTTCACATGGTCAGTTATGCGCCACTCTTTGTAAACACAAATGATAGAAA

upper sequence: AT3G10740.1 (Arabidopsis thaliana), 3'ss of exon 14
lower sequence: EFJ07270 (Selaginella moellendorffii), 3'ss of exon 13
gttccctttgaatttctcttcccaggctttgatctcaactaaaaacatcaaataagttaaacatcttatgactttttgcagTGACATTGTTGAAATGGCAAGTTATGCTCCACTCTTTGTGAACACAAATGATAGACG
|||   |   |   |   |  |   |  |||  ||             | ||| |   || || |||          |||||||||| || ||||||||||| ||||||||| | ||||| ||||||||  | || ||
gtttgatcaaagcattcttctctttgtcttgtcctg------------ctaatgaacgaagcaccttg---------gcagTGACATAGTCGAAATGGCAAGCTATGCTCCATTGTTTGTCAACACAAACAACAGGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttgatctcaactaaaaacatcaaataagttaaacatcttatgactttttgcagTGACATTGTTGAAATGGCAAGTTATGCTCCACTCTTTGTGAACACAAATGATAGACG
          aactaaa  putative branch site (score: 2)
                                             ctttttgc  putative PPT
             taaaaacatcaaataa  TA-rich tract