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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatactagctttctttgtggatttgtttttttgttttttcttttcttggtccgcaatttatagctgactatctatgtggttgacttaagaacagGTTTGGGAGGAATCTTCTGGTGAAAGCCTTCTGCAGATCCAGCTTCTTGTCGCACTGCGAAATTTTGTGATTGCACTTGGTTATCAGTCTCCCATTTGCT

Basic information

species Arabidopsis thaliana
transcript AT3G08960.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G08960.1 (Arabidopsis thaliana), 3'ss of exon 14
lower sequence: GLYMA07G18530.1 (Glycine max), 3'ss of exon 14
---------gtatactagctttctttgtggatttgtttttttgttttttcttttcttggtccgcaatttatagctgactatctatgtggttgacttaagaacagGTTTGGGAGGAATCTTCTGGTGAAAGCCTTCTGCAGATCCAGCTTCTTGTCGCACTGCGAAATTTTGTGATTGCACTTGGTTATCAGTCTCCCATTTGCT
            | | || |   | |  |  |   ||  ||   |       |  |      | ||||| |      || ||||| || ||   ||| |   |||| |||||||| |||||||||||||| || |||||||| ||||||||||| || ||| |||| |||||| ||||||||||||| ||||| ||||||||||
taggtcttaccctgcaagttacatatcagagtagcttagttaactccccgactaatcaaaatggaatttgtctt---ctttctat-tgcttttgttatggcaagGTCTGGGAGGAGTCTTCTGGTGAAAGTCTGCTGCAGATACAGCTTCTTGTTGCCCTGAGAAACTTTGTGGTTGCACTTGGTTACCAGTCACCCATTTGCT

upper sequence: AT3G08960.1 (Arabidopsis thaliana), 3'ss of exon 14
lower sequence: GLYMA16G19490.1 (Glycine max), 3'ss of exon 16
---------gtatactagctttctttgtggatttgtttttttgttttttcttttcttggtccgcaatttatagctgactatctatgtggttgacttaagaacagGTTTGGGAGGAATCTTCTGGTGAAAGCCTTCTGCAGATCCAGCTTCTTGTCGCACTGCGAAATTTTGTGATTGCACTTGGTTATCAGTCTCCCATTTGCT
            | | || |   | |  |  |   ||  ||   |       |  |      | ||||| |      || ||||| || ||   ||| |   |||| |||||||| | |||||||||||| || |||||||| ||||||||||| || ||| |||| |||||| ||||||||||||| ||||| ||||||||||
taggtcttaccctgcaagttacatatcagagtagcttagttaactccccgactaatcaaaatggaatttgtctt---ctttctat-tgcttttgttatggcaagGTCTGGGAGGAGTATTCTGGTGAAAGTCTGCTGCAGATACAGCTTCTTGTTGCCCTGAGAAACTTTGTGGTTGCACTTGGTTACCAGTCACCCATTTGCT

upper sequence: AT3G08960.1 (Arabidopsis thaliana), 3'ss of exon 14
lower sequence: GLYMA18G43420.1 (Glycine max), 3'ss of exon 14
gtatactagctttct--ttgtggatttgtttttttgttttttcttttcttggtccgcaatttatagctgactatctatgtggttgactta---agaacagGTTTGGGAGGAATCTTCTGGTGAAAGCCTTCTGCAGATCCAGCTTCTTGTCGCACTGCGAAATTTTGTGATTGCACTTGGTTATCAGTCTCCCATTTGCT
   |  || | | |   ||    ||  |  |   |    ||   |  |    |   |||  |  |  |     ||| | |  ||   |||    | | |||| |||||||| |||||||||||||| || |||||||| ||||||||||| || ||| | || |||||| |||| |||||||| ||||| ||||||||||
aggtcttatcctgcaagttacatatcagagtagctaaagttaaatccccgactaatcaaaatggaatttgtcttctttctatttcttttattatggaaagGTCTGGGAGGAGTCTTCTGGTGAAAGTCTGCTGCAGATACAGCTTCTTGTTGCTCTGAGGAACTTTGTGGTTGCTCTTGGTTACCAGTCACCCATTTGCT

upper sequence: AT3G08960.1 (Arabidopsis thaliana), 3'ss of exon 14
lower sequence: Vv08s0217g00040.t01 (Vitis vinifera), 3'ss of exon 5
-------gtatactagctttctttgtgg-atttgtttttttgttttttcttttcttggtccgcaatttatagctgactatctatgtg-gttgacttaagaacagGTTTGGGAGGAATCTTCTGGTGAAAGCCTTCTGCAGATCCAGCTTCTTGTCGCACTGCGAAATTTTGTGATTGCACTTGGTTATCAGTCTCCCATTTGCT
       | ||| |   |  || | |   ||  |          |      ||| |  |   ||  ||| ||   | ||   || |  ||  | || | |  |||| ||||||||||||||||||||||| ||||| || || || |||||| | ||||| || |  ||||||| ||||||||| | ||| || ||||||||||
tatttcaggatagtgattggctgtttattatcaggggaaaaaaatagaacattcattcttttca--ttaaaggaaagtactcatttctgtatatttgata--agGTCTGGGAGGAATCTTCTGGTGAAAGTCTTCTACAAATTCAACTTCTTATTGCACTACGGAGCTTTGTGACTGCACTTGGCTTTCAATCACCCATTTGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttcttggtccgcaatttatagctgactatctatgtggttgacttaagaacagGTTTGGGAGGAATCTTCTGGTGAAAGCCTTCTGCAGATCCAGCTTCTTGTCGCACTGCGAAATTTTGTGATTGCACTTGGTTATCAGTCTCCCATTTGCT
               aatttata  TA-rich tract