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gtaagagaactttttaccttccatcgagatttaattaatacagtgggagattctaaagttcaactgactcatttcatcttctctcgtctctttcagGAAACCCTTCTTGTGCATAAGGATCTAGAGCAGAATGCTGTGCTTAATGAGCTTATTTTTGCTCTGCAGAGCAATG
species | Arabidopsis thaliana |
transcript | AT2G39800.4 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: GCATAGTTTCTGATGCAAAGTTGGACTATCCAGCAGCCTGTAATGCGATG GAAACCCTTCTTGTGCATAAGGATCTAGAGCAGAATGCTGTGCTTAATGAGEST: gi|116452373|gb|EG494965.1|EG494965
genomic: GCATAGTTTCTGATGCAAAGTTGGACTATCCAGCAGCCTGTAATGCGATGgtaagagaac ... tctctttcagGAAACCCTTCTTGTGCATAAGGATCTAGAGCAGAATGCTGTGCTTAATGAG
EST: GCATAGTTTCTGATGCAAAGTTGGACTATCCAGCAGCCTGTAATGCGATG GAAACCCTTCTTGEST: gi|47832219|gb|CK121903.1|CK121903
genomic: GCATAGTTTCTGATGCAAAGTTGGACTATCCAGCAGCCTGTAATGCGATGgtaagagaac ... tctctttcagGAAACCCTTCTTG
EST: GCATAGTTTCTGATGCAAAGTTGGACTATCCAGCAGCCTGTAATGCGATG GAAACCCTTCTTGTGCATAAGGATCTAGAGCAGAATGCTGTGCTTAATGAGEST: gi|86060515|gb|DR356272.1|DR356272
genomic: GCATAGTTTCTGATGCAAAGTTGGACTATCCAGCAGCCTGTAATGCGATGgtaagagaac ... tctctttcagGAAACCCTTCTTGTGCATAAGGATCTAGAGCAGAATGCTGTGCTTAATGAG
EST: GCATAGTTTCTGATGCAAAGTTGGACTATCCAGCAGCCTGTAATGCGATG GAAACCCTTCTTGTGCATAAGGATCTAGAGCAGAATGCTGTGCTTAATGAG
genomic: GCATAGTTTCTGATGCAAAGTTGGACTATCCAGCAGCCTGTAATGCGATGgtaagagaac ... tctctttcagGAAACCCTTCTTGTGCATAAGGATCTAGAGCAGAATGCTGTGCTTAATGAG
agtgggagattctaaagttcaactgactcatttcatcttctctcgtctctttcagGAAACCCTTCTTGTGCATAAGGATCTAGAGCAGAATGCTGTGCTTAATGAGCTTATTTTTGCTCTGCAGAGCAATG
aactgac putative branch site (score: 2)
ctcatttcatcttctc CT-rich tract
attctaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagagaactttttaccttccatcgagatttaattaatacagtgggagattctaaagttcaactgactcatttcatcttctctcgtctctttcagGAAACCCTTCTTGTGCATAAGGATCTAGAGCAGAATGCTGTGCTTAATGAGCTTATTTTTGCTCTGCAGAGCAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA