Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtacattaacctgtgctattttctatttttcctagtgctatttgctttcagtactaatgctcctatgtgaattttttatttcagAAAACAAAGAGGCAGAATACTACAACTGGACTTAGGACCTGTAATAACATATTGGCGATGACAAAG

Basic information

species Arabidopsis thaliana
transcript AT2G34040.1
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86076432|gb|DR372189.1|DR372189
EST:     ACAACAAAGCCATGTCGGCTGCTAAGACAGATGAAGAGAAAGCGAGTATT                         AAAACAAAGAGGCAGAATACTACAACTGGACTTAGGACCTGTAATAACATA
genomic: ACAACAAAGCCATGTCGGCTGCTAAGACAGATGAAGAGAAAGCGAGTATTgtaagtacat ... tttatttcagAAAACAAAGAGGCAGAATACTACAACTGGACTTAGGACCTGTAATAACATA
EST: gi|125122077|gb|EL168898.1|EL168898
EST:     AAGAGAAAGCGAGTATT                         AAAACAAAGAGGCAGAATACTACAACTGGACTTAGGACCTGTAATAACATA
genomic: AAGAGAAAGCGAGTATTgtaagtacat ... tttatttcagAAAACAAAGAGGCAGAATACTACAACTGGACTTAGGACCTGTAATAACATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcctagtgctatttgctttcagtactaatgctcctatgtgaattttttatttcagAAAACAAAGAGGCAGAATACTACAACTGGACTTAGGACCTGTAATAACATATTGGCGATGACAAAG
                      tactaat  putative branch site (score: 1)
                                          ttttttatttc  putative PPT
                                  tatgtgaattttttat  TA-rich tract