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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgacttgaacaggatatatcacactttaactgcttcaaacgatttttagatgattcactgtttttattttctagGAAAGTGGCAATCCGAAGGGTTATGAACAATTTGAGAAAGTTCTTATGGGTCTTCTCCGCAGACTCTTGGATACGAACAAGCGGGTTCAGGAGGCTGCCT

Basic information

species Arabidopsis thaliana
transcript AT2G16950.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G16950.1 (Arabidopsis thaliana), 3'ss of exon 14
lower sequence: GLYMA10G42960.1 (Glycine max), 3'ss of exon 14
---------------gtatgacttgaacaggatata-tcacactttaactgctt---caaacg--atttttagatgat--tcactgtttttattttctagGAAAGTGGCAATCCGAAGGGTTATGAACAATTTGAGAAAGTTCTTATGGGTCTTCTCCGCAGACTCTTGGATACGAACAAGCGGGTTCAGGAGGCTGCCT
                | | | || |  |    ||| | | |     |   |||    ||  |  ||||  || |  |  ||  ||  ||| | |  ||||  | |||  ||||||| || |||||||| ||||| || ||||||||||||||||| || ||| | ||||||   || ||||||||||| |||||||| |
cctatatgatctgatatctaattttagtaattcatagttaaataaagagcacttacataattgtcatttcaaggttgtcttctttgaatttgtgtcttagGGTATTGGGCATCCGAAAGGCTATGAACAGTTTGATAATGTTCTTATGGGTCTTCTACGAAGAATTTTGGATGATAATAAGCGGGTTCAAGAGGCTGCTT

upper sequence: AT2G16950.1 (Arabidopsis thaliana), 3'ss of exon 14
lower sequence: GLYMA20G24040.1 (Glycine max), 3'ss of exon 14
----------gtatgacttgaacaggatatatcacactttaa-----ctgcttcaaa----cgatttttagatgattcact----gtttttattttctagGAAAGTGGCAATCCGAAGGGTTATGAACAATTTGAGAAAGTTCTTATGGGTCTTCTCCGCAGACTCTTGGATACGAACAAGCGGGTTCAGGAGGCTGCCT
           | | | || |  |    |||    | |  |       ||||  | |      ||||  ||    |   ||     ||| | | |  ||||  | |||  |||| || || |||||||||||||| || ||||||||||||||||| || ||| | ||||||   || |||||||| || |||||||| |
atggactgatatctaagtttagtaattcatagttaaataaagagaacttgctgtataattgtcatttcaaggctgtcttctttgaatttgtgtgtcttagGGTATTGGGCATCCTAAAGGCTATGAACAATTTGATAATGTTCTTATGGGTCTTCTACGAAGAATTTTGGATGATAATAAGCGGGTCCAAGAGGCTGCTT

upper sequence: AT2G16950.1 (Arabidopsis thaliana), 3'ss of exon 14
lower sequence: Vv03s0038g02830.t01 (Vitis vinifera), 3'ss of exon 14
-------------gtatgactt----gaacaggatatatcacacttt--aactgcttcaaacgatttttagatg--attcactgtttttattt--tctagGAAAGTGGCAATCCGAAGGGTTATGAACAATTTGAGAAAGTTCTTATGGGTCTTCTCCGCAGACTCTTGGATACGAACAAGCGGGTTCAGGAGGCTGCCT
              | | || |    ||||    |   |  ||||||  |||||||  ||   | || |  |||  | | | | ||||| | |  |  |||  | |||  ||| ||| || | |||||| ||||| |||||||||| ||||||||| || ||  | |||||||| ||||||||||| || |||||||| |
cttcttcttagagttctcacctttcagaacttttttcttttcacttttaaactgctgtaacaaaattctgaatggaaattattttttttgtctatttcagGGTATTGGTCATCAGAAAGGCTCTGAACAGTTTGACAAAGTTCTTAGGGGTCTTCTACGAAGGATATTGGATACCAACAAGCGGGTGCAAGAGGCTGCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacactttaactgcttcaaacgatttttagatgattcactgtttttattttctagGAAAGTGGCAATCCGAAGGGTTATGAACAATTTGAGAAAGTTCTTATGGGTCTTCTCCGCAGACTCTTGGATACGAACAAGCGGGTTCAGGAGGCTGCCT
    ctttaac  putative branch site (score: 3)
                                      ctgtttttattttct  putative PPT
                                       tgtttttattttcta  TA-rich tract