Sequence
atgc intronic sequence ATGC exonic sequencegtatgtgacttttttaagaacttttatctattttcatggttctttttttggttgttcataatgggtggcatatcttatctgttttagGAATTTAGCACGAAGAACAAATTGCTTATTACTGGTACTCCACTACAGAATAGTGTCGAAGAGCTTTG
Basic information
species | Arabidopsis thaliana |
transcript | AT2G13370.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G13370.1 (Arabidopsis thaliana), 3'ss of exon 14
lower sequence: GLYMA02G45000.1 (Glycine max), 3'ss of exon 13
gtatgtgacttttttaagaacttttatctattttcatggttctttttttggttgttcataatgggtggcatatcttatc-tgttttagGAATTTAGCACGAAGAACAAATTGCTTATTACTGGTACTCCACTACAGAATAGTGTCGAAGAGCTTTG
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gtatgtaacatttctcttaatttatttttgtgcaattgtttatgatagagtttattttttatggtttgtttttttgctaatcttttagGAATTTAGCACCAAGAACAAATTGCTTATCACTGGCACTCCTCTACAGAACAGTGTGGAAGAACTATG
upper sequence: AT2G13370.1 (Arabidopsis thaliana), 3'ss of exon 14
lower sequence: GLYMA14G03780.1 (Glycine max), 3'ss of exon 13
gtatgtgacttttttaagaacttttatctattttcatggttctttttttggtt--gttcataatgggtggcatatcttatc-tgttttagGAATTTAGCACGAAGAACAAATTGCTTATTACTGGTACTCCACTACAGAATAGTGTCGAAGAGCTTTG
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gtatgtaacatttgtcttaatttatttct-ctgtgattgtttatgatagagtttaatattttatggtttgtttttgtgctaatcttttagGAATTTAGCACCAAGAACAAGTTGCTTATCACCGGTACTCCTCTACAGAACAGTGTGGAAGAACTATG
upper sequence: AT2G13370.1 (Arabidopsis thaliana), 3'ss of exon 14
lower sequence: Vv06s0009g03750.t01 (Vitis vinifera), 3'ss of exon 13
----------------------------------------------------------------------------------------------------gtatgtgacttttttaagaacttttatctattttcatggttctttttttggttgttcataatgggtggcatatcttatctgttt-tagGAATTTAGCACGAAGAACAAATTGCTTATTACTGGTACTCCACTACAGAATAGTGTCGAAGAGCTTTG
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gtatgctgtatttcttaatgatatgtttacgttggccttttatttatgaagcacaatagtaaacaatcctctgggtacacatatttcattataattttctggcttttgtcttttcaataaataatatttatttttgttgatgagtcttatttggttaatgctagatg--atgccttgcttttctgcagGAATTCAGTGCCAAGAACAAGTTGCTGATCACTGGTACTCCATTACAGAACAGTGTTGAAGAGCTTTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttcatggttctttttttggttgttcataatgggtggcatatcttatctgttttagGAATTTAGCACGAAGAACAAATTGCTTATTACTGGTACTCCACTACAGAATAGTGTCGAAGAGCTTTG
tcttatct CT-rich tract
ttcttttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgtgacttttttaagaacttttatctattttcatggttctttttttggttgttcataatgggtggcatatcttatctgttttagGAATTTAGCACGAAGAACAAATTGCTTATTACTGGTACTCCACTACAGAATAGTGTCGAAGAGCTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT