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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtattttcgttctacttcaacactcattcaaagttatattcctgaatacgatttctcattagaattcatctgaaaattgtagCGTGGGAGATCCGTTCAAGGACACAGCCGGTCCATCCATTCACGTCCTCATAAAAATGCTTGCGACTATAACTCTCGTCATGGCTCCGGTTTTCCTCTGA

Basic information

species Arabidopsis thaliana
transcript AT1G78920.1
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116443900|gb|EG486492.1|EG486492
EST:     CTTGGGGGCAAAGGAAGTGAAGCTCACAAAGCAGCTGTGACTGGTGATAC                         CGTGGGAGATCCGTTCAAGGACACAGCCGGTCCATCCATTCACGTCCTCAT
genomic: CTTGGGGGCAAAGGAAGTGAAGCTCACAAAGCAGCTGTGACTGGTGATACgtaagtattt ... aaaattgtagCGTGGGAGATCCGTTCAAGGACACAGCCGGTCCATCCATTCACGTCCTCAT
EST: gi|164184412|gb|ES047969.1|ES047969
EST:     TGACTGGTGATAC                         CGTGGGAGATCCGTTCAAGGACACAGCCGGTCCATCCATTCACGTCCTCAA
genomic: TGACTGGTGATACgtaagtattt ... aaaattgtagCGTGGGAGATCCGTTCAAGGACACAGCCGGTCCATCCATTCACGTCCTCA-
EST: gi|124940319|gb|EL016781.1|EL016781
EST:     GGGGCAAAGGAAGTGAAGCTCACAAAGCAGCTGTGACTGGTGATAC                         CGTGGGAGATCCGTTCAAGGACACAAGCCGGTCCATCCATCCACGTCCTCA
genomic: GGGGCAAAGGAAGTGAAGCTCACAAAGCAGCTGTGACTGGTGATACgtaagtattt ... aaaattgtagCGTGGGAGATCCGTTCAAGGACACA-GCCGGTCCATCCATTCACGTCCTCA
EST: gi|124926367|gb|EL004217.1|EL004217
EST:     GGGGCAAAGGAAGTGAAGCTCACAAAGCAGCTGTGACTGGTGATAC                         CGTGGGAGATCCGTTCAAGGACACAGCCGGTCCATCCATTCACGTCCTCAT
genomic: GGGGCAAAGGAAGTGAAGCTCACAAAGCAGCTGTGACTGGTGATACgtaagtattt ... aaaattgtagCGTGGGAGATCCGTTCAAGGACACAGCCGGTCCATCCATTCACGTCCTCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaaagttatattcctgaatacgatttctcattagaattcatctgaaaattgtagCGTGGGAGATCCGTTCAAGGACACAGCCGGTCCATCCATTCACGTCCTCATAAAAATGCTTGCGACTATAACTCTCGTCATGGCTCCGGTTTTCCTCTGA
                              attagaatt  TA-rich tract