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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaattacaagcttgattttgttaacgatatgctttaaccaatgattataagtttttctaacagtttctattttgcaaacacagAGTGGGCCAAGCATCACTTCAAAAGAAGACTGGGGTGTCAATTATAGAGCTTTGAATGACTTGTTTCTCTTAACTCAGAGTAGACAAAACACTGTCATGT

Basic information

species Arabidopsis thaliana
transcript AT1G63640.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G63640.1 (Arabidopsis thaliana), 3'ss of exon 14
lower sequence: GRMZM2G323622_T01 (Zea mays), 3'ss of exon 5
--------gtaaattacaagcttgattttgttaacgata-tgctttaaccaatgattataagtt-tttctaacagtttctattttgcaaacacagAGTGGGCCAAGCATCACTTCAAAAGAAGACTGGGGTGTCAATTATAGAGCTTTGAATGACTTGTTTCTCTTAACTCAGAGTAGACAAAACACTGTCATGT---
        | | |   |||  | ||   |   |  |||| |  |     | ||  |  ||| |  |  || ||| | | | |||| |      ||||||||||| |||   | ||||||||||| |||||||| || ||| ||||||| ||||||||||||    |  |||  ||||||   ||  || ||   |   
gtaagacggcagagctcaaaatagaaagttgaattgataatagtcgtggcgatattagtaattggtgcctgacattgttttttttcc-----tagAGTGGGCCAGGCA---CATCAAAAGAAGATTGGGGTGTTAACTATCGAGCTTTAAATGACTTGTTTTATATCTCTCTAAGTAGAAGGAATGCTTTCTCATATG

upper sequence: AT1G63640.1 (Arabidopsis thaliana), 3'ss of exon 14
lower sequence: GRMZM2G173700_T03 (Zea mays), 3'ss of exon 11
----------gtaaattacaagcttgattt--tgttaacgatatgctttaaccaatgattataa-gtttttctaacagtttctattttgcaaacacagAGTGGGCCAAGCATCACTTCAAAAGAAGACTGGGGTGTCAATTATAGAGCTTTGAATGACTTGTTTCTCTTAACTCAGAGTAGACAAAACACTGTCATGT---
           ||||| | ||     | ||    | |     ||  |   |  | ||||||| |  | | | |    |||  |||||         ||||||||||    | ||| |||||| |||| ||||||||||||||| ||||||| ||||| ||||||    |  | |  |||||   |||  |  ||   |   
gtactataaaataaatcataataaaaaattgtcatcactacaatagtaatattactgattatgatatctgttttgttgttattatttaatc--tttagAGTGGGCC---TACCACATCAAAACAAGATTGGGGTGTCAATTATCGAGCTTTAAATGATTTGTTTGATATTTCACTAAGTAGGAGAAATGCCTTCTCATATG

upper sequence: AT1G63640.1 (Arabidopsis thaliana), 3'ss of exon 14
lower sequence: GRMZM2G124883_T01 (Zea mays), 3'ss of exon 5
gta-aattacaagcttgattttgttaacgatatgctttaaccaatgattataagtttttctaacagtttct----attttgcaaacacagAGTGGGCCAAGCATCACTTCAAAAGAAGACTGGGGTGTCAATTATAGAGCTTTGAATGACTTGTTTCTCTTAACTCAGAGTAGACAAAACACTGTCATGT---
|||  |   || |  |     |   || | |    || |   ||   ||   | | || ||||| ||| ||    ||| |     |  ||||||||||| |||   | ||||||||||| |||||||| || ||| ||||||| |||||||||||   | |  |||  ||||||   ||  || ||   |   
gtacgagggcagggcttgaaataacaaagttgaaattgatataagccttggga-tattactaactgttgcttgacattgttttttcttagAGTGGGCCAGGCA---CATCAAAAGAAGATTGGGGTGTTAACTATCGAGCTTTAAATGACTTGTTCGACATCTCTCTAAGTAGAAGGAATGCTTTCTCATATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgctttaaccaatgattataagtttttctaacagtttctattttgcaaacacagAGTGGGCCAAGCATCACTTCAAAAGAAGACTGGGGTGTCAATTATAGAGCTTTGAATGACTTGTTTCTCTTAACTCAGAGTAGACAAAACACTGTCATGT
                          ttctaac  putative branch site (score: 1)
           aatgattataagtttt  TA-rich tract