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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtccatgtccctttatttgtgcatttgagattgtacttgggacaagttccgagttacaaagatgtgaaatggaattgttaatttatgcaaagttttgtttcttttgcagGGAGCAATGCTGTTTGGTAAGCGGTTAGAAGTAAACTTCTCAAAGCATCCAAATATAACACCAGGCACAGACTCTCATGATTATGTAAACTCTAACCTGA

Basic information

species Arabidopsis thaliana
transcript AT1G43190.3
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124886066|gb|EH964968.1|EH964968
EST:     TGGTTTCCAAGCTGAACTTGCAGTACATTTCCTCAAG                         GGAGCAATGCTGTTTGGTAAGCGGTTAGAAGTAAACTTCTCAAAGCATCCA
genomic: TGGTTTCCAAGCTGAACTTGCAGTACATTTCCTCAAGgtttgtccat ... tcttttgcagGGAGCAATGCTGTTTGGTAAGCGGTTAGAAGTAAACTTCTCAAAGCATCCA
EST: gi|125316060|gb|EL330145.1|EL330145
EST:     CGATGGTTTCCAAGCTGAACTTGCAGTACATTTCCTCAAG                         GGAGCAATGCTGTTTGGTAAGCGGTTAGAAGTAAACTTCTCAAAGCATCCA
genomic: CGATGGTTTCCAAGCTGAACTTGCAGTACATTTCCTCAAGgtttgtccat ... tcttttgcagGGAGCAATGCTGTTTGGTAAGCGGTTAGAAGTAAACTTCTCAAAGCATCCA
EST: gi|47829251|gb|CK118935.1|CK118935
EST:     TCCAAATGGGCGATGGTTTCCAAGCTGAACTTGCAGTACATTTCCTCAAG                         GGAGCAATGCTGTTTGGTAAGCGGTTAGAAGTAAACTTCTCAAAGCATCCA
genomic: TCCAAATGGGCGATGGTTTCCAAGCTGAACTTGCAGTACATTTCCTCAAGgtttgtccat ... tcttttgcagGGAGCAATGCTGTTTGGTAAGCGGTTAGAAGTAAACTTCTCAAAGCATCCA
EST: gi|125245165|gb|EL259250.1|EL259250
EST:     TCCAAATGGGCGATGGTTTCCAAGCTGAACTTGCAGTACATTTCCTCAAG                         GGAGCAATGCTGTTTGGTAAGCGGTTAGAAGTAAACTT
genomic: TCCAAATGGGCGATGGTTTCCAAGCTGAACTTGCAGTACATTTCCTCAAGgtttgtccat ... tcttttgcagGGAGCAATGCTGTTTGGTAAGCGGTTAGAAGTAAACTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacaaagatgtgaaatggaattgttaatttatgcaaagttttgtttcttttgcagGGAGCAATGCTGTTTGGTAAGCGGTTAGAAGTAAACTTCTCAAAGCATCCAAATATAACACCAGGCACAGACTCTCATGATTATGTAAACTCTAACCTGA
                     tgttaat  putative branch site (score: 3)
                                      ttttgtttcttttgc  putative PPT
                  aattgttaatttat  TA-rich tract