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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtctctttcgagatcttttgcctatttgcagcattacttaatataactttagctgctgcattttgccactatttactttcagtaataaaaattcccttttctgtatcgaaagcatctgctgttttaaaaactatctctgtgattctgaccatttcttttatgtgcataattgtagCTCTGTACTCTTGAATTTGAAACCCGGCGTGCTTCATACTATTGGCTGTTACATTCCCTGAGTCTCTACATGCCATATGTGTGGGAATATTCACGGTTGA

Basic information

species Arabidopsis thaliana
transcript AT1G25350.2
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G25350.2 (Arabidopsis thaliana), 3'ss of exon 14
lower sequence: Vv01s0011g03740.t01 (Vitis vinifera), 3'ss of exon 14
gttagtctctttcgagatcttttgcctatttgcagcattacttaatataactttagctgctgcattttgccactatttactttcagtaataaaaattcccttttctgtatcgaaagcatctgctgttttaaaaactatctctgtgattctgaccatttc-ttttatgtgcataat-tgtagCTCTGTACTCTTGAATTTGAAACCCGGCGTGCTTCATACTATTGGCTGTTACATTCCCTGAGTCTCTACATGCCATATGTGTGGGAATATTCACGGTTGA
                                                                      || | || ||  ||| |  |   ||   ||||||           |  | |||  ||  |  ||||     | |||        |||    |||  ||| ||  | || |||| ||||| |||||||||||||| || |||||||||||||| ||| || || || | ||  | || |||   || ||||| |||||||| ||||||||||
----------------------------------------------------------------------cattcttgacaatcaattttgtgaagctcctttt-----------gagtttgcatttgaatgaacttgtaatatgacgtcatttattcaactttcggtgtattttatgcagCTATGTACACTTGAATTTGAAACACGCCGTGCTTCATACTACTGGTTGATAGATGCACTTGGCCTTTACCAACCTTATGTCTGGGAATACTCACGGTTGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttttaaaaactatctctgtgattctgaccatttcttttatgtgcataattgtagCTCTGTACTCTTGAATTTGAAACCCGGCGTGCTTCATACTATTGGCTGTTACATTCCCTGAGTCTCTACATGCCATATGTGTGGGAATATTCACGGTTGA
                      ttctgac  putative branch site (score: 2)
                              atttcttttat  TA-rich tract