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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataataaaaggagctcccttcaatattgtagacaaaaatatacaggatctgtgcaatagcatattaacaaaagagagtttatttcattttggttgcagCATGGGATCAATTTTAGGGTGCAGAGCGGAGATAATACAACTAGATGTGACTGATGTGAAAATGGGCGACCCATGAATTGCCAAGTAAATGCCCGATGTT

Basic information

species Arabidopsis thaliana
transcript AT1G20410.1
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124893123|gb|EH972025.1|EH972025
EST:     CATACATCAAAGAGTTTGTTCATGGAGATCTTGGTCGTACCACTCCCAG                         CATGGGATCAATTTTAGGGTGCAGAGCGGAGATAATACAACTAGA
genomic: CATACATCAAAGAGTTTGTTCATGGAGATCTTGGTCGTACCACTCCCAGgtataataaa ... ttggttgcagCATGGGATCAATTTTAGGGTGCAGAGCGGAGATAATACAACTAGA
EST: gi|19800018|gb|AU231308.1|AU231308
EST:     ACATACATCAAAGAGTTTGTTCATGGAGATCTTGGTCGTACCACTCCCAG                         CA-GGGATCA-TTTTAGG-TGCAGAGCGGAGATAATACAACTAGATGTGAC
genomic: ACATACATCAAAGAGTTTGTTCATGGAGATCTTGGTCGTACCACTCCCAGgtataataaa ... ttggttgcagCATGGGATCAATTTTAGGGTGCAGAGCGGAGATAATACAACTAGATGTGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aggatctgtgcaatagcatattaacaaaagagagtttatttcattttggttgcagCATGGGATCAATTTTAGGGTGCAGAGCGGAGATAATACAACTAGATGTGACTGATGTGAAAATGGGCGACCCATGAATTGCCAAGTAAATGCCCGATGTT
                  tattaac  putative branch site (score: 1)
                                      tttcatttt  putative PPT
                                agtttatttcatttt  TA-rich tract