Sequence
atgc intronic sequence ATGC exonic sequencegtatgtcttgattcgaaatcttaagttagatcaatagtacaattattgcgaaaaagttgtgatagaacaaaagttactatgtttttcctttttcagGGAAGAATGATTCTTGCTCACTTGTGTGATGAGCCTAAAGGACTAAAAACAAACATGTGCATG
Basic information
species | Arabidopsis thaliana |
transcript | AT1G13560.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G13560.2 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: LOC_Os02g02750.1 (Oryza sativa), 3'ss of exon 13
---gtatgtcttgattcgaaatcttaagttagatcaatagtacaattattgcgaaaaa-gttgtgatagaacaaaagttactatgtttttccttttt---cagGGAAGAATGATTCTTGCTCACTTGTGTGATGAGCCTAAAGGACTAAAAACAAACATGTGCATG
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atagtttatgtaagccagtatattttggtctgac--atgcttcttttgttgcaaaagacactcttat-gagcattacctaatatctacttctattatgcacagGGCAGAATGATTCTGGCTCACTTATGTGATGAGCCCAAAGGTCTGAAGACAGGGATGTGCATG
upper sequence: AT1G13560.2 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: LOC_Os02g02750.3 (Oryza sativa), 3'ss of exon 13
---gtatgtcttgattcgaaatcttaagttagatcaatagtacaattattgcgaaaaa-gttgtgatagaacaaaagttactatgtttttccttttt---cagGGAAGAATGATTCTTGCTCACTTGTGTGATGAGCCTAAAGGACTAAAAACAAACATGTGCATG-------------------------------------
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atagtttatgtaagccagtatattttggtctgac--atgcttcttttgttgcaaaagacactcttat-gagcattacctaatatctacttctattatgcacagGGCAGAATGATTCTGGCTCACTTATGTGATGAGCCCAAAGGTCTGAAGACAGGGATGTGCATGGTTGTTGCCTAATCACCTTTGTTCTTTGGTTTTGTTT
upper sequence: AT1G13560.2 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: GRMZM2G701058_T01 (Zea mays), 3'ss of exon 11
-gtatgtcttgattcgaaatcttaagt--tagatcaatagtacaattattgcgaaaaagttgtgatagaacaaaagttacta-tgtttttcctttttcagGGAAGAATGATTCTTGCTCACTTGTGTGATGAGCCTAAAGGACTAAAAACAAACATGTGCATG
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gggacaaactcagtgtaatactaacgcactatcacagtatcactctttttgtttatatttataactactgcttataatgtaaataatcatctatgaacagGGAAGAATGATACTTGCTCATTTGTGTGATGAACCCAAAGGTCTAAAATCTGGGATGTTCATG
upper sequence: AT1G13560.2 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: GRMZM2G466281_T01 (Zea mays), 3'ss of exon 13
gtatgtcttgattcgaaatcttaagttagat-caatagtacaattattgcgaaaaagttgtgata-gaacaaaagtta----ctatgtttttcctttttcagGGAAGAATGATTCTTGCTCACTTGTGTGATGAGCCTAAAGGACTAAAAACAAACATGTGCATG
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-catg-cttattttatttttctcttacagatgccctctttcagttactgtagtgcagtaaaaatatgaacattactttacatctgcttatattgctccacagGGAAGAATGATTCTGGCTCACTTGTGTGATGAACCCAAGGGTTTGAAAACAGGGATGTGCATGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125203148|gb|EL218102.1|EL218102EST: AACTGGACTTGCATTTGGATTTTTAGTG GGAAGAATGATTCTTGCTCACTTGTGTGATGAGCCTAAAGGACTAAAAACA
genomic: AACTGGACTTGCATTTGGATTTTTAGTGgtatgtcttg ... cctttttcagGGAAGAATGATTCTTGCTCACTTGTGTGATGAGCCTAAAGGACTAAAAACA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attattgcgaaaaagttgtgatagaacaaaagttactatgtttttcctttttcagGGAAGAATGATTCTTGCTCACTTGTGTGATGAGCCTAAAGGACTAAAAACAAACATGTGCATG
ttactatgtttttcct CT-rich tract
tatgttttt TA-rich tract